View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_17 (Length: 511)
Name: NF21242_low_17
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 22774923 - 22774435
Alignment:
| Q |
1 |
ttgaacttgaacaattctcattgttcatgttatcacaagctacagttctatgtaattgtaaactcaaaaattgagactaaattgcatagtttgttaatct |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22774923 |
ttgaacttgaacaattctcattgttcatattatcacaagctacagttctatgtaattgtaaactcaaaaattgagactaaattgcatagtttgttaatct |
22774824 |
T |
|
| Q |
101 |
aatgtagctgtatttgcatgagaaaaattccacagtacacaagctgaagctgaacaatgtcattgttcataatgtcacaagatacaattgtaaagtcaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22774823 |
aatgtagctgtatttgcatgagaaaaattccacagaacacaaactgaagctgaacaatgtcattgttcataatgtcacaagatacaattgtaaagtcaac |
22774724 |
T |
|
| Q |
201 |
aaatgagactgtattacaattttttgtaatacattctatgtgagaaattcattattcttcctccaatgaaatgataatttccatagtttcattttaacaa |
300 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22774723 |
aaatgagactgtattacaattttttgtaaaacattctatgtgggacattcattattcttcctccaatgaaatgataatttccat-gtttcattttaacaa |
22774625 |
T |
|
| Q |
301 |
agcacaaattcatatgaaatatctattctatgtcatctaatgagtgtccagaaagagaattggcacnnnnnnncttcaatccttttgttcctttttacca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
22774624 |
agcacaaattcatatgaaatatctattctatgtcatctaatgagtgtccagaaagagaattggcacaaaaaaacttcaatcccgttgttcctttttacca |
22774525 |
T |
|
| Q |
401 |
aagaaaacggttcttcaattaggcgaactcgatggaggcaagtacatttcatcctcacctgaaagatcttcatgaattgaaggcatagga |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22774524 |
aagaaaacggttcttcaattaggcgaactcgatggaggcaagtacatttcatcctcacctgaaagatcttcatgaattgaaggcatagga |
22774435 |
T |
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