View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21242_low_18 (Length: 510)
Name: NF21242_low_18
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_18 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 19 - 510
Target Start/End: Original strand, 32560378 - 32560869
Alignment:
| Q |
19 |
gcaagggcttgtcttactgcaagaatgttgaacagaacactattgatgcctagtcttagtgcttccttgttttacaaggaaatcgatcttttacaaccga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32560378 |
gcaagggcttgtcttactgcaagaatgttgaacagaacactattgatgcctagtcttagtgcttccttgttttacaaggaaatcgatcttttacaaccga |
32560477 |
T |
|
| Q |
119 |
tttcatttgataaggtgtttcaatttgataaatttaatgaactgtgcagtggttttgttcaattgggtcgttactctgatctcttgaacagaacacaagt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32560478 |
tttcatttgataaggtgtttcaatttgataaatttaatgaactgtgtagtggttttgttcaattgggtcgttactctgatctcttgaacagaacacaagt |
32560577 |
T |
|
| Q |
219 |
ggttgaattgcagaaaggaagtggtagaaagtggacagttcaaagggatttggatcagttgagacagtataaaaatggttcttttgatgatatcgaggtg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32560578 |
ggttgaattgcagaaaggaagtggtagaaagtggacagttcaaagggatttggatcagttgagacagtataaaaatggttcttttgatgatattgaggtg |
32560677 |
T |
|
| Q |
319 |
attaagattgatgggaaaaaccctttcttgtggcatgatcattggcctgttaaggactatgcaaaggtttttgagtgcttagtcctggttgatgaattta |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32560678 |
attaagattgatgggaaaaaccctttcttgtggcatgatcattggcctgttaaggactatgcaaaggtttttgagtgcttagtcctggttgatgaattta |
32560777 |
T |
|
| Q |
419 |
ctcaagaagctgatagagttgcctctatgattagaaaagttggtagccatgatgataaaggtaattcatttcagaattatgtgccctatgtt |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32560778 |
ctcaagaagctgatagagttgcctctatgattagaaaagttggtagccatgatgataaaggtaattcatttcagaattatgtgccttatgtt |
32560869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 10750799 - 10751178
Alignment:
| Q |
19 |
gcaagggcttgtcttactgcaagaatgttgaacagaacactattgatgcctagtcttagtgcttccttgttttacaaggaaatcgatcttttacaaccga |
118 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||||| || ||||||||||| ||||||| ||| | || ||||| |||||||||| || ||||||| |
|
|
| T |
10750799 |
gcaaggtcttgtcttactgctagaatgttgaatagaacccttttgatgcctagctttagtgcctccctattctacaaagaaatcgatcaattgcaaccga |
10750898 |
T |
|
| Q |
119 |
tttcatttgataaggtgtttcaatttgataaatttaatgaactgtgcagtggttttgttcaattgggtcgttactctgatctcttgaacagaacacaagt |
218 |
Q |
| |
|
||| ||||| || || || |||||||| || ||||||| ||| || |||||||||||||| || || || || || ||||||| ||||| | ||| |
|
|
| T |
10750899 |
ttttgtttgagaaagtattccaatttgaaaagtttaatgcactttgtagtggttttgttcagttaggccggtataacaatgtcttgaatagaacccgagt |
10750998 |
T |
|
| Q |
219 |
ggttgaattgcagaaaggaagtggtagaaagtggacagttcaaagggatttggatcagttgagacagtataaaaatggttcttttgatgatatcgaggtg |
318 |
Q |
| |
|
| ||||| || |||||| ||||| || ||||||||| | | || ||||| || |||| |||||| || || |||| ||||||| |||||| |
|
|
| T |
10750999 |
gcttgaaatgacgaaagggagtggaaggaagtggacattggagagagatttatcacaattgaaggagtatagtaaaggctcttatgatgattacgaggta |
10751098 |
T |
|
| Q |
319 |
attaagattgatgggaaaaaccctttcttgtggcatgatcattggcctgttaaggactatgcaaaggtttttgagtgctt |
398 |
Q |
| |
|
||| | ||| ||||||||||||||||| |||||||||||||||||| | || |||||| |||||||||||||||||| |
|
|
| T |
10751099 |
attgaaattatagggaaaaaccctttcttatggcatgatcattggcctttgaaaaactatggaaaggtttttgagtgctt |
10751178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University