View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_low_19 (Length: 510)

Name: NF21242_low_19
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_low_19
NF21242_low_19
[»] chr3 (9 HSPs)
chr3 (13-490)||(5374661-5375141)
chr3 (124-492)||(5368105-5368476)
chr3 (124-487)||(5362894-5363260)
chr3 (111-487)||(5356252-5356631)
chr3 (112-487)||(5368916-5369306)
chr3 (44-84)||(5363276-5363316)
chr3 (44-81)||(5368495-5368532)
chr3 (133-194)||(7126688-7126749)
chr3 (125-201)||(7178718-7178794)
[»] chr6 (2 HSPs)
chr6 (133-200)||(33839541-33839608)
chr6 (133-193)||(33843461-33843521)
[»] chr8 (1 HSPs)
chr8 (129-218)||(30054498-30054587)
[»] chr7 (1 HSPs)
chr7 (133-198)||(44500709-44500774)
[»] chr4 (1 HSPs)
chr4 (133-194)||(36590659-36590720)
[»] scaffold0210 (1 HSPs)
scaffold0210 (133-193)||(15608-15668)


Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 13 - 490
Target Start/End: Complemental strand, 5375141 - 5374661
Alignment:
Q  13 caaaggagagaacctatcgaaggaaagaaggatagttatatattttagacaaaatttatatataaagaaacggaaaatacaagcaattgaagaacaaaat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5375141 caaaggagagaacctatcgaaggaaagaaggatagttatatattttagacaaaatttatatataaagaaacgaaaaatacaagcaattgaagaacaaaat 5375042  T
Q  113 ataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375041 ataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatc 5374942  T
Q  213 ctcttcgacccatctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaaaagca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  5374941 ctcttcgacccatctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtgtttgattcggagtgccagtaaaagca 5374842  T
Q  313 aagttagaaagacacggagcagataacttgagtttgcgtccgta---gctataaagatagtatccatatatagttaagttgacaagcgttgtatttgata 409  Q
    ||  |||||||| |||||||||||||| ||| ||||| |  |||   | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5374841 aatgtagaaagatacggagcagataacatgattttgcttttgtagttgttataaagatagtatccatatatagttaagttgacaagcgttgtatttgata 5374742  T
Q  410 tgcagagaatttgtgccttcagaactggacactgtcgaatgatcaaagtattcaacttcttcaaggctgagaagggtttag 490  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5374741 tgcagagaatttgtgccttcagaactggacactgtcgaatgatcaaagtattcaacttcttcaaggctgagaagggtttag 5374661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 124 - 492
Target Start/End: Complemental strand, 5368476 - 5368105
Alignment:
Q  124 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttcgaccc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  5368476 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctcgagcagccagctgagtagggttgcagaatcctcttcgaccc 5368377  T
Q  224 atctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaaaagcaaagttagaaag 323  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||    
T  5368376 agctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtgtttgattcggagtgccagtaaaagcaaatgtagaaag 5368277  T
Q  324 acacggagcagataacttgagtttgcgtccgta---gctataaagatagtatccatatatagttaagttgacaagcgttgtatttgatatgcagagaatt 420  Q
    | |||||||||||||| ||| ||||| |  |||   | |||||||||| ||||||||||||||||||||||||||||||||| ||||||| || ||| ||    
T  5368276 atacggagcagataacatgattttgcttttgtacttgttataaagataatatccatatatagttaagttgacaagcgttgtacttgatatacaaagactt 5368177  T
Q  421 tgtgccttcagaactggacactgtcgaatgatcaaagtattcaacttcttcaaggctgagaagggtttagtg 492  Q
    ||| | ||||||| |    | | || |||||||||||||||||  || |||||||  |||||||||| ||||    
T  5368176 tgtcctttcagaaatctcaaatttccaatgatcaaagtattcagtttgttcaaggacgagaagggttcagtg 5368105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 124 - 487
Target Start/End: Complemental strand, 5363260 - 5362894
Alignment:
Q  124 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttcgaccc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  5363260 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctcaagcagccagctgagtagggttgcagaatcctcttcgaccc 5363161  T
Q  224 atctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaaaagcaaagttagaaag 323  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||    
T  5363160 agctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtgtttgattcggagtgccagtaaaagcaaatgtagaaag 5363061  T
Q  324 acacggagcagataacttgagtttgcgtccgta---gctataaagatagtatccatatatagttaagttgacaagcgttgtatttgatatgcagagaatt 420  Q
    | |||||||||||||| ||| ||||| |  |||   | |||||||||| ||||||||||||||||||||||||||||||||| ||||||| || ||| ||    
T  5363060 atacggagcagataacatgattttgcttttgtacttgttataaagataatatccatatatagttaagttgacaagcgttgtacttgatatacaaagactt 5362961  T
Q  421 tgtgccttcagaactggacactgtcgaatgatcaaagtattcaacttcttcaaggctgagaagggtt 487  Q
    ||| | ||||||| |    | | || |||||||||||||||||  || |||||||  ||||||||||    
T  5362960 tgtcctttcagaaatctcaaatttctaatgatcaaagtattcagtttgttcaaggacgagaagggtt 5362894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 111 - 487
Target Start/End: Complemental strand, 5356631 - 5356252
Alignment:
Q  111 atataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaa 210  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| ||||  |||||||    
T  5356631 atataaatatagcagcctcaaaacctgaagagtattagaagagactgtcaatgattttatattggcaagctctagcagccagctgagtaggactgcagaa 5356532  T
Q  211 tcctcttcgacccatc---tgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaa 307  Q
    ||||||| |||  | |    |||||||||| ||| ||  |||||||||||||||||||||||||||||||||| |||| || |||| |||||||||||||    
T  5356531 tcctctttgacgaagccgacgatgtcttctgcattaacatataagtgtgtaatagaacaaggatggctcacacttagtattagatttggagtaccagtaa 5356432  T
Q  308 aagcaaagttagaaagacacggagcagataacttgagtttgcgtccgtagctataaagatagtatccatatatagttaagttgacaagcgttgtatttga 407  Q
    ||| |||||||| ||||| ||||| | |||||| ||||||||||  ||   |||||  ||| |||   |  ||||| ||||| ||||| |||||||||||    
T  5356431 aagaaaagttagtaagactcggagtaaataactcgagtttgcgtatgtccttataatcataatatgtttccatagtaaagtttacaagggttgtatttga 5356332  T
Q  408 tatgcagagaatttgtgccttcagaactggacactgtcgaatgatcaaagtattcaacttcttcaaggctgagaagggtt 487  Q
    |||||| ||| ||||||| | |||||||  | | ||||||||||||||||||||||||||  ||||||| ||||||||||    
T  5356331 tatgcaaagagtttgtgcatccagaactctaaattgtcgaatgatcaaagtattcaacttgctcaaggcggagaagggtt 5356252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 112 - 487
Target Start/End: Complemental strand, 5369306 - 5368916
Alignment:
Q  112 tataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctg---aatagggttgcag 208  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||   | ||||  |||||    
T  5369306 tataaatataacggcctcaaaacctgaagagtattagaagagactgtcaatgatttgatattagcaagctcttgcagccagctgatcagtaggactgcag 5369207  T
Q  209 aatcctcttcgacccatc---tgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagt 305  Q
    ||||||||| |||  | |   ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||    
T  5369206 aatcctctttgacgaagccgatgatgtcttctgcatgaatgcataagtgtgtaatagaacaaggatggctcacacataattttagatctggagtaccagt 5369107  T
Q  306 aaaagcaaagttagaaagacacggagcagataacttgagtttgcgtccgtagctataaagata---------gtatccatatatagttaagttgacaagc 396  Q
    |||||||||  ||||||| | ||||| |||||||| ||||||| ||   |   |||||  |||          ||||||   ||||| ||||| ||||||    
T  5369106 aaaagcaaacatagaaagtctcggagtagataactcgagtttgtgtatctccttataataataataataattatatccaaccatagtaaagtttacaagc 5369007  T
Q  397 gttgtatttgatatgcagagaatttgtgccttcagaactggacactgtcgaatgatcaaagtattcaacttcttcaaggctgagaagggtt 487  Q
    |||||  |||||||||| ||| ||||||| | || ||||  ||| |||||||||||||||||||||||||| ||||||| |||||||||||    
T  5369006 gttgtgcttgatatgcaaagagtttgtgcatccacaactttacaatgtcgaatgatcaaagtattcaacttgttcaaggttgagaagggtt 5368916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 5363316 - 5363276
Alignment:
Q  44 atagttatatattttagacaaaatttatatataaagaaacg 84  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  5363316 atagttatacattttagacaaaatttatatataaagaaacg 5363276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 5368532 - 5368495
Alignment:
Q  44 atagttatatattttagacaaaatttatatataaagaa 81  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  5368532 atagttatacattttagaccaaatttatatataaagaa 5368495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 7126749 - 7126688
Alignment:
Q  133 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagct 194  Q
    |||||||||||||| |||||||| || |||| |||| ||| |||||||||| ||| ||||||    
T  7126749 acctgaagagtattcgaagagacggtcaatgttttggtatcagcaagctcttgcaaccagct 7126688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 7178794 - 7178718
Alignment:
Q  125 gcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagg 201  Q
    |||| ||||||||||||||| || ||||||  || |||||| |||||||||||| ||| || |||||| ||| ||||    
T  7178794 gccttaaaacctgaagagtactataagagatcgtcaatgatgtgatattagcaaactcgagaagccagttgagtagg 7178718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 33839541 - 33839608
Alignment:
Q  133 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatag 200  Q
    |||||||||||| | |||||||||||||||||||  || |||||||| ||||||||||||||||||||    
T  33839541 acctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatag 33839608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 33843461 - 33843521
Alignment:
Q  133 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagc 193  Q
    ||||||||||| || |||| ||||||||||||||  |  |||||||| |||||||||||||    
T  33843461 acctgaagagtttttgaagtgactgttaatgattctaagttagcaaggtctagcagccagc 33843521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 30054498 - 30054587
Alignment:
Q  129 caaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttc 218  Q
    ||||||||||||||||| ||||||||| || |||||||||||||||| || || ||| |||||| ||| ||||  |||||| || |||||    
T  30054498 caaaacctgaagagtatcagaagagacagtcaatgatttgatattagaaaactgtagtagccagttgagtaggactgcagattcgtcttc 30054587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 44500709 - 44500774
Alignment:
Q  133 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaat 198  Q
    |||||||||||| | | |||||| || |||||||| || |||||||||||||| ||||||||||||    
T  44500709 acctgaagagtagttgtagagaccgtcaatgattttatgttagcaagctctagtagccagctgaat 44500774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 36590659 - 36590720
Alignment:
Q  133 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagct 194  Q
    |||||||||||| | | |||||| || |||||||||||||||||||| |||| |||||||||    
T  36590659 acctgaagagtactcgcagagaccgtcaatgatttgatattagcaagttctaacagccagct 36590720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 15608 - 15668
Alignment:
Q  133 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagc 193  Q
    |||||||||||| | |||| |||||| ||||||||||||||||  ||||| | ||||||||    
T  15608 acctgaagagtacttgaagggactgtcaatgatttgatattagtgagctcgaccagccagc 15668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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