View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_21 (Length: 486)
Name: NF21242_low_21
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 49107921 - 49108217
Alignment:
| Q |
18 |
aaataccatattcttatgttttgaatgcagatttgcttatttctaccgcaactgattctattttannnnnnnngaaggaccggaactgattctatataat |
117 |
Q |
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| T |
49107921 |
aaataccatattcttatgttttgaatgcagatttgcttatttctaccgcaactgattctattttattttttttgaaggaccggaactgattctatataat |
49108020 |
T |
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| Q |
118 |
gcatatatttctcctttttattctatgtagtgcatcgtttggaacagttgtgggtcactttattatatcaagaagaagaatactaattagggcatggtta |
217 |
Q |
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| T |
49108021 |
gcatatatttctcctttttattctatgtagtgcat-gtttggaagagttgtgggtcactttattatatcaagaagaagaatactaattagggcatggtta |
49108119 |
T |
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| Q |
218 |
aagtattggttaaaattataaaagaaataagtttggattaaaaattatgtaattattacatgacaaaaataacatgtctttttaagacaatacatcaa |
315 |
Q |
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| T |
49108120 |
aagtattggttaaaattataaaagaaataagtttggattaaaaattatgtaattattacatgacaaaaataacatctctttttaagacaatacatcaa |
49108217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 357 - 470
Target Start/End: Original strand, 49108249 - 49108362
Alignment:
| Q |
357 |
aattccttctccaaattgctcaagacatttattaacaaaattcttatattaaatattcaaacgttacaaatcgtagcttcattggtcatgttccttggcc |
456 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49108249 |
aattccttctccaaattgctcaagacatttattaacaaaattcttatattaaatattcaaacgttacaaatcgtagcttcattggtcatgttctttggcc |
49108348 |
T |
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| Q |
457 |
aaggactaattcat |
470 |
Q |
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| T |
49108349 |
aaggactaattcat |
49108362 |
T |
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