View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21242_low_22 (Length: 473)
Name: NF21242_low_22
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 34964240 - 34964697
Alignment:
| Q |
1 |
actctaaactttcagacctgataacatcaactcttttcctcaataataagtacttaaacctcattattacaacattttaggtctaataataaatccttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34964240 |
actctaaactttcagacctgataacatcaactcttttcctcaataataagtacttaaacctcattattacaacattttaggtctaataataaatccttca |
34964339 |
T |
|
| Q |
101 |
gattatatgttaaaataactgtataatgaaaattttcttaatggaattggacattgctaaatattcacatttttgcctaatattttttnnnnnnnnnnnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34964340 |
gattatatgttaaaataactgtataatgaaaattttcttaatggaattggacattgctaaatattcacatttttgcctaatattttttaaaaatcaaaca |
34964439 |
T |
|
| Q |
201 |
nnnnntttgttgtttgaacattatgaaaaacaactaatatctacctgttgcttacctactattaccgaatttgatggtatcctgctccctaagttcataa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34964440 |
agaaatttgttgtttgaacattatgaaaaacaactaatatctacctgtcgcttacctactattaccgaattcgatggtatcctgctccctaagttcataa |
34964539 |
T |
|
| Q |
301 |
taccgttgaggttcaatgggactatcctgcaaaaacaaagtatcagataatcaataatgaccactcacattaacgaatgttttgtttgtgcttccaaggt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34964540 |
taccgttgaggttcaatgggactatcctgcaaaaacaaagtatcagataatcaataatgaccactcacattaacgaatgttttgtttgtgcttccaaggt |
34964639 |
T |
|
| Q |
401 |
ccattatgtaaggtctattgcagatcacaaagatgttagggttttacatgcagaaatt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34964640 |
ccattatgtaaggtctattgcagatcacaaagatgttagggttttacatgcagaaatt |
34964697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 6 - 358
Target Start/End: Original strand, 18421777 - 18422127
Alignment:
| Q |
6 |
aaactttcagacctgataacatcaa-ctcttttcctcaataataagtacttaaacctcattattacaacattttaggtctaataataaatccttcagatt |
104 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||| |||||||||||||||||| |||||| || |
|
|
| T |
18421777 |
aaactttcagacctgataacatcaaactcttttcctcaatc-taagtacttaaggctt-ttgctacaacatcttaggtctaataataaatgcttcaggtt |
18421874 |
T |
|
| Q |
105 |
atatgttaaaataactgtataatgaaaattttcttaatggaattggacattgctaaatattcacatttttgcctaatattttttnnnnnnnnnnnnnnnn |
204 |
Q |
| |
|
|||| | |||| || |||||||||| |||| | |||||||||||| || | ||||||||||||||||| |||||| |||||| |
|
|
| T |
18421875 |
atatatcaaaacaataatataatgaaatttttttaaatggaattggaaatcgttaaatattcacatttttacctaat-tttttttcaaatcaaataagaa |
18421973 |
T |
|
| Q |
205 |
ntttgttgtttgaacattatgaaaaacaactaatatctacctgttgcttacctactattaccgaatttgatggtatcctgctccctaagttcataatacc |
304 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
18421974 |
atatattgtttgaacattatgaaaaacaactaatatatacttgtcacttacctactattaccaaatttaatggtgtcctgctccctaagttcataatacc |
18422073 |
T |
|
| Q |
305 |
gttgaggttcaatgggactatcctgcaaaaacaaagtatcagataatcaataat |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18422074 |
gttgaggttcaatgggactatcctgcaaaaacaaagtatcagatagccaataat |
18422127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 356 - 456
Target Start/End: Original strand, 18422209 - 18422309
Alignment:
| Q |
356 |
aatgaccactcacattaacgaatgttttgtttgtgcttccaaggtccattatgtaaggtctattgcagatcacaaagatgttagggttttacatgcagaa |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18422209 |
aatgaccactcacattaacgaatgttttgtttgtgcttccgaggtccattatgtaaggcctattgcagatcaaaaagatgttagggttttacatgcagaa |
18422308 |
T |
|
| Q |
456 |
a |
456 |
Q |
| |
|
| |
|
|
| T |
18422309 |
a |
18422309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University