View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_low_23 (Length: 472)

Name: NF21242_low_23
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_low_23
NF21242_low_23
[»] chr1 (13 HSPs)
chr1 (84-456)||(9218823-9219195)
chr1 (84-445)||(9170751-9171112)
chr1 (84-445)||(9200318-9200679)
chr1 (88-456)||(9161914-9162282)
chr1 (84-447)||(9118166-9118529)
chr1 (84-443)||(9156015-9156374)
chr1 (84-242)||(9178936-9179094)
chr1 (154-437)||(9229727-9230010)
chr1 (175-415)||(1868269-1868509)
chr1 (193-419)||(1816126-1816352)
chr1 (304-415)||(1842789-1842900)
chr1 (193-419)||(1856692-1856918)
chr1 (1-36)||(9219243-9219278)
[»] chr7 (1 HSPs)
chr7 (195-236)||(37567636-37567677)


Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 84 - 456
Target Start/End: Complemental strand, 9219195 - 9218823
Alignment:
Q  84 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9219195 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcaaatattcacggaagaggaacttaagaaagccaccaaaaac 9219096  T
Q  184 tacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgttaaaaagtccaaaataa 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9219095 tacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgtcaaaaagtccaaaataa 9218996  T
Q  284 tagacgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagac 383  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9218995 tagacgcaaatcagatcgagcaattcattaatgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagac 9218896  T
Q  384 agaagttccttcattggtgtatgaatttgttagcaacggaacacttttcgatttcatacaaaattgtaaagat 456  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9218895 agaagttccttcgttggtgtatgaatttgttagcaacggaacactttttgatttcatacaaaattgtaaagat 9218823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 84 - 445
Target Start/End: Complemental strand, 9171112 - 9170751
Alignment:
Q  84 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 183  Q
    ||||||||| ||||||||||||||||| || ||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  9171112 tggtggttccattttgctacaacaactgtctacaagtgaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagccaccaaaaac 9171013  T
Q  184 tacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgttaaaaagtccaaaataa 283  Q
    ||||| |||||||||||||| || |||||||||||||||||||||| ||||||| |||| || || |||||||| |||||||| ||||| ||||||||||    
T  9171012 tacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaaggagttttacctgacaacaaaatcgtcgctgtaaaaaaatccaaaataa 9170913  T
Q  284 tagacgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagac 383  Q
    | ||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||  ||||||||||| | |||||    
T  9170912 ttgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagac 9170813  T
Q  384 agaagttccttcattggtgtatgaatttgttagcaacggaacacttttcgatttcatacaaa 445  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  9170812 agaagttccttcattggtgtacgaatttgttagcaacggtacacttttcgatttcatacaaa 9170751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 84 - 445
Target Start/End: Complemental strand, 9200679 - 9200318
Alignment:
Q  84 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 183  Q
    ||||||||| |||||| |||| |||||||| ||||||||||||||||| ||| |||| || |||||||| |||||||||||||||||||||||||||||     
T  9200679 tggtggttccattttggtacagcaactatctacaagagaagacacttctcaagcagcacaaatattcacagaagaggaacttaagaaagccaccaaaaaa 9200580  T
Q  184 tacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgttaaaaagtccaaaataa 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||| ||||| ||||||||||    
T  9200579 tacgacgaaagcttaatcatcggtagaggaggttttggtacagtttacaaaggagttttacctgataacaaaattgtcgctgtaaaaaaatccaaaataa 9200480  T
Q  284 tagacgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagac 383  Q
    | ||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||  |||| |||||| | |||||    
T  9200479 ttgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctaggctgttgtctagagac 9200380  T
Q  384 agaagttccttcattggtgtatgaatttgttagcaacggaacacttttcgatttcatacaaa 445  Q
    ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  9200379 agaagttccttcattagtgtacgaatttgttagcaacggtacacttttcgatttcatacaaa 9200318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 88 - 456
Target Start/End: Complemental strand, 9162282 - 9161914
Alignment:
Q  88 ggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaactacg 187  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||    
T  9162282 ggttctatattgctacaacagctatcaacaagagaagacacttcgcaatcagctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacg 9162183  T
Q  188 acgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgttaaaaagtccaaaataataga 287  Q
    | || |||||||||||||| |||||||||||||||||||||||||||||| | || || ||||||||||| |||||||| ||||| ||||||||||||||    
T  9162182 atgatagcttaatcatcggcagaggaggttttggtacagttttcaaaggagtcttaccagataacaaaatcgtcgctgtcaaaaaatccaaaataataga 9162083  T
Q  288 cgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagacagaa 387  Q
     |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || || |||||||| |||||||||    
T  9162082 tgcaaatcaaattgagcagttcattaacgaggtagttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttagagacagaa 9161983  T
Q  388 gttccttcattggtgtatgaatttgttagcaacggaacacttttcgatttcatacaaaattgtaaagat 456  Q
    |||||||| |||||||||||||| |||||||| || |||||||||||||||||||| |||  |||||||    
T  9161982 gttccttcgttggtgtatgaattcgttagcaatggtacacttttcgatttcatacataatactaaagat 9161914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 84 - 447
Target Start/End: Original strand, 9118166 - 9118529
Alignment:
Q  84 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 183  Q
    ||||||||  |||||||||||| |||| |  |||||||||||||| || |||||||||||||||||||| ||| |||||||||| ||||| ||||| | |    
T  9118166 tggtggtttcattttgctacaaaaactctttacaagagaagacacgtctcaatcagctcagatattcacagaaaaggaacttaaaaaagctaccaacagc 9118265  T
Q  184 tacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgttaaaaagtccaaaataa 283  Q
    |||||||||||||||||||| || ||||||||||| |||||| ||||||||||| |||| |||||||||| ||| || ||||| |||||||||| |||||    
T  9118266 tacgacgaaagcttaatcattggaagaggaggtttcggtacaattttcaaaggagttttacccgataacagaatcgtggctgtcaaaaagtccagaataa 9118365  T
Q  284 tagacgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagac 383  Q
    ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  9118366 tagacgcaaatcaaatcgagcaattcattaatgaggtagttattctgtcccaaataaatcataggaatgttgtcaaacttttagggtgttgtttagagac 9118465  T
Q  384 agaagttccttcattggtgtatgaatttgttagcaacggaacacttttcgatttcatacaaaat 447  Q
    |||||||||||| ||||| |||||||| |||||| |||| ||||||||||||||||||||||||    
T  9118466 agaagttccttccttggtctatgaattcgttagccacggtacacttttcgatttcatacaaaat 9118529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 84 - 443
Target Start/End: Complemental strand, 9156374 - 9156015
Alignment:
Q  84 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 183  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||||    
T  9156374 tggtggttccattttgctacaacaactatctacaagagaagacacctcgcaatcagctgaaatattcactgaagaggaacttaagaaagccaccaaaaac 9156275  T
Q  184 tacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgttaaaaagtccaaaataa 283  Q
    ||||| |||| ||||||||| || |||||||||||||||||||||||||||||| |||| ||||| |||||||| || ||||| ||||| || |||||||    
T  9156274 tacgatgaaaacttaatcattggcagaggaggttttggtacagttttcaaaggagttttacccgacaacaaaatcgttgctgtaaaaaaatcaaaaataa 9156175  T
Q  284 tagacgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagac 383  Q
    |||| |||||||| |||||||| || ||||| ||||||||||| || |||||||||||||| || || ||||||||||| || || |||||||| |||||    
T  9156174 tagatgcaaatcaaatcgagcagtttattaatgaggtagttgtcctatcccaaataaatcacagaaatgttgtcaaactcttgggatgttgtttagagac 9156075  T
Q  384 agaagttccttcattggtgtatgaatttgttagcaacggaacacttttcgatttcataca 443  Q
    |||||||||||| ||||| |||||||| |||||||| || |||||||| |||||||||||    
T  9156074 agaagttccttccttggtttatgaattcgttagcaatggtacactttttgatttcataca 9156015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 84 - 242
Target Start/End: Complemental strand, 9179094 - 9178936
Alignment:
Q  84 tggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaatcagctcagatattcacggaagaggaacttaagaaagccaccaaaaac 183  Q
    ||||||||| ||||||||||||||||| || ||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  9179094 tggtggttccattttgctacaacaactgtctacaagtgaagacacttcgcaagcagctcaaatattcacagaagaggaacttaagaaagccaccaaaaac 9178995  T
Q  184 tacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaatttt 242  Q
    ||||| |||||||||||||| || |||||||||||||||||||||| ||||||| ||||    
T  9178994 tacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaaggagtttt 9178936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 154 - 437
Target Start/End: Complemental strand, 9230010 - 9229727
Alignment:
Q  154 gaagaggaacttaagaaagccaccaaaaactacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataaca 253  Q
    ||||| |||||||||||||| ||||| ||||| || || || ||||| || || ||||||||||| ||||| |||| |||||||||| |  | || ||||    
T  9230010 gaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaattctagcagacaaca 9229911  T
Q  254 aaattgtcgctgttaaaaagtccaaaataatagacgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgt 353  Q
      ||||| ||  | || |||||||||||||| || || |  ||  | ||||||||||| || ||||| |||||| ||||||||||||||||||| || ||    
T  9229910 ggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttttgtcccaaataaatcatagaaatgt 9229811  T
Q  354 tgtcaaacttttagggtgttgtttggagacagaagttccttcattggtgtatgaatttgttagcaacggaacacttttcgattt 437  Q
    ||||||||| || || ||||||||||||||| ||||||||| | | || ||||||||| ||||||| || || |||||||||||    
T  9229810 tgtcaaactcttgggatgttgtttggagacacaagttcctttactagtttatgaatttattagcaatggtacccttttcgattt 9229727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 175 - 415
Target Start/End: Original strand, 1868269 - 1868509
Alignment:
Q  175 accaaaaactacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgttaaaaagt 274  Q
    |||||||||| |||||| |  |||||||| || | ||| ||||||||||| |||||||||||| || |    ||||| | ||| || ||| | ||||| |    
T  1868269 accaaaaacttcgacgagaatttaatcattggcaaaggtggttttggtaccgttttcaaaggacttctagatgataaaagaatcgttgctatcaaaaaat 1868368  T
Q  275 ccaaaataatagacgcaaatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttg 374  Q
    | |||||||||||   ||  || ||||| ||||||||||| ||||| |||||||| || ||||||||||||||||| ||||||||||| || ||||||||    
T  1868369 caaaaataatagatagaagccaaatcgatcaattcattaatgaggtggttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttg 1868468  T
Q  375 tttggagacagaagttccttcattggtgtatgaatttgtta 415  Q
    ||| ||||||||||||||||  ||||| |||||||||||||    
T  1868469 tttagagacagaagttcctttgttggtttatgaatttgtta 1868509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 193 - 419
Target Start/End: Complemental strand, 1816352 - 1816126
Alignment:
Q  193 agcttaatcatcggtagaggaggttttggtacagttttcaaagga-attttgcccgataacaaaattgtcgctgttaaaaagtccaaaataatagacgca 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  |  |||   ||||| | |||||| ||| | ||||||||||||| |||||||| |    
T  1816352 agcttaatcataggtagaggaggttttggtacagttttcaaaggggaacttgat-gataatagaattgtggctatcaaaaagtccaaaacaatagacgaa 1816254  T
Q  292 aatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagacagaagttc 391  Q
    |  || || || ||||||||||||||||| | |||| | || ||||||||||| ||||| || |||||||| || ||||||||| | || ||||||||||    
T  1816253 agccaaattgaacaattcattaacgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttggggtgttgtctagaaacagaagttc 1816154  T
Q  392 cttcattggtgtatgaatttgttagcaa 419  Q
    |||  ||||| ||||| |||||||||||    
T  1816153 ctttgttggtttatgagtttgttagcaa 1816126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 304 - 415
Target Start/End: Original strand, 1842789 - 1842900
Alignment:
Q  304 caattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagacagaagttccttcattggtgt 403  Q
    ||||||||||| |||||| || |||| || ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||  ||||| |    
T  1842789 caattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggttt 1842888  T
Q  404 atgaatttgtta 415  Q
    ||||||||||||    
T  1842889 atgaatttgtta 1842900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 419
Target Start/End: Original strand, 1856692 - 1856918
Alignment:
Q  193 agcttaatcatcggtagaggaggttttggtacagttttcaaagga-attttgcccgataacaaaattgtcgctgttaaaaagtccaaaataatagacgca 291  Q
    ||||||||||| |||| |||||||||||||||||||| ||||||  |  |||   ||||| | |||||| ||| | |||||||| |||| |||||||  |    
T  1856692 agcttaatcataggtaaaggaggttttggtacagtttacaaaggggaacttgat-gataatagaattgttgctatcaaaaagtctaaaacaatagacaaa 1856790  T
Q  292 aatcagatcgagcaattcattaacgaggtagttgttctgtcccaaataaatcataggaacgttgtcaaacttttagggtgttgtttggagacagaagttc 391  Q
    |  || || || ||||||||||| ||||| | |||| | || ||||||||||| || || || |||||||| |||||||||||| | || ||||||||||    
T  1856791 agccaaattgaacaattcattaatgaggtggatgttgtctctcaaataaatcacagaaatgtggtcaaactcttagggtgttgtctagaaacagaagttc 1856890  T
Q  392 cttcattggtgtatgaatttgttagcaa 419  Q
    |||  ||||| ||||| |||||||||||    
T  1856891 ctttgttggtttatgagtttgttagcaa 1856918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9219278 - 9219243
Alignment:
Q  1 ctatttgtggcggtttcatctctatacttgacgtac 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  9219278 ctatttgtggcggtttcatctctatacttgacgtac 9219243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 37567636 - 37567677
Alignment:
Q  195 cttaatcatcggtagaggaggttttggtacagttttcaaagg 236  Q
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T  37567636 cttaaccataggtagaggaggttttggtacagttttcaaagg 37567677  T

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