View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_25 (Length: 461)
Name: NF21242_low_25
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 21 - 451
Target Start/End: Original strand, 26925738 - 26926165
Alignment:
| Q |
21 |
gactctcatctcaacaagaaagcatcattgtcttcaaagaaaagaagcaccaagcacggtgatgatggtgatcatgagaatgatggtagtggggatggtg |
120 |
Q |
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| T |
26925738 |
gactctcatctcaacaagaaagcatcattgtcttcaaagaaaagaagcaccaagcacggtgatgatggtgatcatgagaatgatggtagtggggatggtg |
26925837 |
T |
|
| Q |
121 |
attgtttttactcatcaacatcacccttgcaatataaggagaagaaatcctcaagacgggatcgcaagaaaggtcgtgttggaatatggaggcctcattt |
220 |
Q |
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| T |
26925838 |
attgtttttactcatcaacatcacccttgcaatataaggagaagaaatcctcaagacgggatcgcaagaaaggtcgtgttggaatatggaggcctcattt |
26925937 |
T |
|
| Q |
221 |
agcaagtatttctgaagactagatagttttcagaattgtcagtcagtgtcacgtaaatcacgacactggctgcagcagaggaggaccgttnnnnnnnttt |
320 |
Q |
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| T |
26925938 |
agcaagtatttctgaagattaaatggttttcagaattgtcagccagtgtca---taatcacgacactggctgcggcagaggaggaccgttaaaaaaattt |
26926034 |
T |
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| Q |
321 |
aatggttcaattattgaaatatatagcaacatggccctttttagtgttttacaagggtacgtgggcatgtaattgagtggataattttttgttaaccttg |
420 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
26926035 |
aatggttcaattattgaaatatatagcagcatggccctttttattgttttacaagtgtacgtgggcatttaattttgtggataatttttttttaaccttg |
26926134 |
T |
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| Q |
421 |
ctttgcgtatacttgtgttttaatttctgtg |
451 |
Q |
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|||| |||||||||||||||||||||||||| |
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| T |
26926135 |
cttttcgtatacttgtgttttaatttctgtg |
26926165 |
T |
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