View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_27 (Length: 447)
Name: NF21242_low_27
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 196 - 436
Target Start/End: Original strand, 19095164 - 19095404
Alignment:
| Q |
196 |
aagatttaaaactatctcctaaatgatgctaaaacaactatatgacaaactattatctaatctccatagttgaactttttccttgtctttaagcaacgaa |
295 |
Q |
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| T |
19095164 |
aagatttaaaactatctcctaaatgaagctaaaacaactatatgacaaactatcatctaagctccatagttgaaatttttccttgtctttaagcaacgaa |
19095263 |
T |
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| Q |
296 |
cttgtaaaatagaattctacaacaaaataacaagtctcactgaaatataagaacaataaaaattctttacctgatctggtaatggatcatcgacatttga |
395 |
Q |
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| T |
19095264 |
cttgtaaaatagaattctacaacaaaataacaagtctcactgaaatataagaacaataaaaattctttacctgatctggtaatggaccaccgacatttga |
19095363 |
T |
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| Q |
396 |
tgcattcttttacttaaagactctgattctccagacttcat |
436 |
Q |
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| T |
19095364 |
tgcattcttttacttaaagactctgattctccagacttcat |
19095404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 19094980 - 19095131
Alignment:
| Q |
16 |
atatatgctaagaaatcacttttaatattcttgtcaaaagtataacacacgaccacgaaattgtctagtttgaatgatttgacatgtttcaaggtcttgt |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19094980 |
atatatcctaagaaatcacttttaatattcttgtcaaaagtataacac--gaccacgaaattgtctagtttgaatgatttgacatgtttcaaggtcttgt |
19095077 |
T |
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| Q |
116 |
tttcatttttcttgtcccttgcgtgtccattggtttatttacaaatactcaacc |
169 |
Q |
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| T |
19095078 |
tttcatttttcttgtcccttgcgtgtccattggtttatttacaaatactcaacc |
19095131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 23055241 - 23055205
Alignment:
| Q |
74 |
aattgtctagtttgaatgatttgacatgtttcaaggt |
110 |
Q |
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|||| ||| |||||||||||||||||||||||||||| |
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| T |
23055241 |
aattatctggtttgaatgatttgacatgtttcaaggt |
23055205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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