View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_29 (Length: 441)
Name: NF21242_low_29
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 27109956 - 27109751
Alignment:
| Q |
14 |
agatggcagtggggagtatggttgttgaggatccaaatcccgctcccgatggtaaaccaaactttgtatcgaagtttgcattaaaacacaaagaaacaat |
113 |
Q |
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| T |
27109956 |
agatggcagtggggagtatggttgttgaggatccaaatcccgttcccgatggtaaaccaaactttgtatcaaagtttgcattaagacacaaagaaacaat |
27109857 |
T |
|
| Q |
114 |
tagtctctatatcattgagtttattcatatttgcatattgataatataatcttaaatgaaatgctttacttgaatttcaataagaaaaagcacctaattc |
213 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27109856 |
tagtctcgatatcattgagtttattcatatttgcatattgataatataatcttaaatgaaatgctttacttgaatttcaataagaaaaagcacctaattc |
27109757 |
T |
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| Q |
214 |
agaaca |
219 |
Q |
| |
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|||||| |
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| T |
27109756 |
agaaca |
27109751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 27151753 - 27151548
Alignment:
| Q |
14 |
agatggcagtggggagtatggttgttgaggatccaaatcccgctcccgatggtaaaccaaactttgtatcgaagtttgcattaaaacacaaagaaacaat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
27151753 |
agatggcagtggggagtatggttgttgaggatccaaatcccgttcccgatggtaaaccaaactttgtatcaaagtttgcattaagacacaaagaaacaat |
27151654 |
T |
|
| Q |
114 |
tagtctctatatcattgagtttattcatatttgcatattgataatataatcttaaatgaaatgctttacttgaatttcaataagaaaaagcacctaattc |
213 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27151653 |
tagtctcgatatcattgagtttattcatatttgcatattgataatataatcttaaatgaaatgctttacttgaatttcaataagaaaaagcacctaattc |
27151554 |
T |
|
| Q |
214 |
agaaca |
219 |
Q |
| |
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|||||| |
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| T |
27151553 |
agaaca |
27151548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 317 - 427
Target Start/End: Complemental strand, 27109754 - 27109644
Alignment:
| Q |
317 |
aacaaattacatgaaaaattcatctaacaagtatttattagtatctctacttcaattgatttgttgtcatcacccaaaaatgccttttttgtttcgattg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27109754 |
aacaaattacatgaaaaattcatctaacaagtatttattagtatctctacttcaattgatttgttgtcatcacccaaaaatgccttttttgtttcgattg |
27109655 |
T |
|
| Q |
417 |
aaggaggaaag |
427 |
Q |
| |
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||||||||||| |
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| T |
27109654 |
aaggaggaaag |
27109644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 317 - 427
Target Start/End: Complemental strand, 27151551 - 27151441
Alignment:
| Q |
317 |
aacaaattacatgaaaaattcatctaacaagtatttattagtatctctacttcaattgatttgttgtcatcacccaaaaatgccttttttgtttcgattg |
416 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27151551 |
aacaaattacatgaaaaattcatctaacaagtatttattagtatctctacttcaattgatttgttgtcatcacccaaaaatgccttttttgtttcgattg |
27151452 |
T |
|
| Q |
417 |
aaggaggaaag |
427 |
Q |
| |
|
||||||||||| |
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|
| T |
27151451 |
aaggaggaaag |
27151441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 383
Target Start/End: Complemental strand, 27112922 - 27112840
Alignment:
| Q |
301 |
taaaagcaagatgaacaacaaattacatgaaaaattcatctaacaagtat-ttattagtatctctacttcaattgatttgttgt |
383 |
Q |
| |
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||||||||||||||| | |||| |||||||||| |||||||||||| | | |||||| || ||||||||||||||||||||||| |
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| T |
27112922 |
taaaagcaagatgaaaatcaaaatacatgaaaa-ttcatctaacaaatctcttattaatagctctacttcaattgatttgttgt |
27112840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 383
Target Start/End: Complemental strand, 27154715 - 27154633
Alignment:
| Q |
301 |
taaaagcaagatgaacaacaaattacatgaaaaattcatctaacaagtat-ttattagtatctctacttcaattgatttgttgt |
383 |
Q |
| |
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||||||||||||||| | |||| |||||||||| |||||||||||| | | |||||| || ||||||||||||||||||||||| |
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| T |
27154715 |
taaaagcaagatgaaaatcaaaatacatgaaaa-ttcatctaacaaatctcttattaatagctctacttcaattgatttgttgt |
27154633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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