View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_3 (Length: 652)
Name: NF21242_low_3
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 304 - 633
Target Start/End: Original strand, 34095243 - 34095569
Alignment:
| Q |
304 |
ccactaagaggtgtaggagttgaacagttagagaagcagaggatagcggcattgatgaaaaaacactttgatcttcctcatcaacaacaacaggttttga |
403 |
Q |
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| T |
34095243 |
ccactaagaggtgtaggagttgaacagttagagaagcagaggatagcggcattgatgaaaaaacactttgatcttcctcatcaac---aacaggttttga |
34095339 |
T |
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| Q |
404 |
agtatggtgcattttcaccaactgggccatttcagtttcctcaacaacaaatgatgatgaatgaaaacaccaccaacaacaataataacactgttttggt |
503 |
Q |
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| T |
34095340 |
agtatggtgcattttcaccaactgggccatttcagtttcctcaacaacaaatgatgatgaatgaaaacaccaccaacaacaataataacactgttttggt |
34095439 |
T |
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| Q |
504 |
tggttctggttatgttccttttgttggttctaacgttggtgctggatggattgtgcctaacaatcacaatcagaatcagaataacattaacaacagggtt |
603 |
Q |
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| T |
34095440 |
tggttctggttatgttccttttgttggttctaacgttggtgctggatggattgtgcctaacaatcagaatcagaatcagaataacattaaaaacagggtt |
34095539 |
T |
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| Q |
604 |
gttgttggtggcggtaactatggatctggt |
633 |
Q |
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| T |
34095540 |
gttgttggtggtggtaactatggatctggt |
34095569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 34094983 - 34095103
Alignment:
| Q |
43 |
gggttcccaaaacaataagaccccccaaaagcattacacacatataccaaaatgtcctttcaccaattttcaccaacacattctgattttccttttcctt |
142 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34094983 |
gggtccccaaaacaataagaccctccaaaagcattacacacatataccaaaatgtcctttcaccaattttcaccaacacattctgattttccttttcctt |
34095082 |
T |
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| Q |
143 |
cataaaataaaaccctcacac |
163 |
Q |
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| T |
34095083 |
cataaaataaaaccctcacac |
34095103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 463
Target Start/End: Complemental strand, 12294624 - 12294560
Alignment:
| Q |
399 |
tttgaagtatggtgcattttcaccaactgggccatttcagtttcctcaacaacaaatgatgatga |
463 |
Q |
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| T |
12294624 |
tttgaggtatggtgcattatcatcaaatgtgtcatttcagtttcctcaacaacaagtgatgatga |
12294560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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