View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_31 (Length: 437)
Name: NF21242_low_31
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 30 - 429
Target Start/End: Complemental strand, 9219655 - 9219257
Alignment:
| Q |
30 |
tacgaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcac |
129 |
Q |
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| T |
9219655 |
tacgaatgtttttgtcctaatggacaatctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcac |
9219556 |
T |
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| Q |
130 |
taagcatagcccacatatattgtcacaagttttagttaggattgaatcagttgcaaatactcgagtttgataaccgactctagaacaatatttagttaca |
229 |
Q |
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| T |
9219555 |
taagaataacccacatatattttcacaatttctagttaagattgaatcagt-gcgaatactcgagtttgataactgactctagaacaatttttagttaca |
9219457 |
T |
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| Q |
230 |
tttacctaagtttaagtcgaactcaagattactaaaagggccgaagggttaagaccaggnnnnnnntatgattaaagtattcagcatgcatgttagctat |
329 |
Q |
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| T |
9219456 |
tttatctaactttaagttgaactccagactactaaaagggtcgaagggttaagaccaggaaaaaaatatgattaaggtattcagcatgcatgttagctat |
9219357 |
T |
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| Q |
330 |
tgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtggcggtttcatctc |
429 |
Q |
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| T |
9219356 |
tgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtggcggtttcatctc |
9219257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 9162699 - 9162578
Alignment:
| Q |
21 |
gatggatcatacgaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattg |
120 |
Q |
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| T |
9162699 |
gatggattatatgaatgtttctgtcctgatggacaatctggaaatggaacacttgaaggaggttgtcatagacgagatattgttatcaaggttgccattg |
9162600 |
T |
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| Q |
121 |
gtaagtcactaagcatagccca |
142 |
Q |
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| T |
9162599 |
gtatgtcactaaacatagccca |
9162578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 9156876 - 9156784
Alignment:
| Q |
33 |
gaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaag |
125 |
Q |
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| T |
9156876 |
gaatgtttctgtcctgatggacactctggaaatggaacattggaaggagggtgtcatagacgagaggtcatcaccaaggttgccattggtaag |
9156784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 9171484 - 9171392
Alignment:
| Q |
33 |
gaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaag |
125 |
Q |
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| T |
9171484 |
gaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggagggtgtcatagacgagatgttattaccaaggttgccattggtaag |
9171392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 9179466 - 9179374
Alignment:
| Q |
33 |
gaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaag |
125 |
Q |
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| T |
9179466 |
gaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggagggtgtcatagacgagatgttattaccaaggttgccattggtaag |
9179374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 9201174 - 9201067
Alignment:
| Q |
33 |
gaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaa |
132 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| || |||| || ||||||||||||| ||||||||| |||| |
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| T |
9201174 |
gaatgtttttgtcctgatggacaatctggaaatggaacgttggcaggaggttgtcataaacaagatgttattaccaaggttgcaattggtaagaacctaa |
9201075 |
T |
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| Q |
133 |
gcatagcc |
140 |
Q |
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| T |
9201074 |
gcatagcc |
9201067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 425
Target Start/End: Complemental strand, 9162459 - 9162352
Alignment:
| Q |
318 |
catgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtgg |
417 |
Q |
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| T |
9162459 |
catgttagctatcgatattattttatagaacaatttatgaattgacttcaatacatttcaaatgcaggagcaagtgctggaatcattattctatttgtgg |
9162360 |
T |
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| Q |
418 |
cggtttca |
425 |
Q |
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| T |
9162359 |
cgatttca |
9162352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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