View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_low_33 (Length: 435)

Name: NF21242_low_33
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_low_33
NF21242_low_33
[»] chr1 (5 HSPs)
chr1 (269-425)||(17588594-17588750)
chr1 (63-209)||(17588815-17588961)
chr1 (18-65)||(17589096-17589143)
chr1 (147-199)||(42591991-42592043)
chr1 (367-415)||(52968571-52968619)
[»] chr4 (2 HSPs)
chr4 (67-179)||(44617387-44617499)
chr4 (343-413)||(21621875-21621945)
[»] chr8 (1 HSPs)
chr8 (67-150)||(39138394-39138477)
[»] chr2 (4 HSPs)
chr2 (67-142)||(12011218-12011293)
chr2 (67-150)||(12003904-12003987)
chr2 (67-142)||(12010383-12010458)
chr2 (67-127)||(12004702-12004762)
[»] chr5 (1 HSPs)
chr5 (67-142)||(34173597-34173672)
[»] chr3 (1 HSPs)
chr3 (67-150)||(40206213-40206293)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 269 - 425
Target Start/End: Complemental strand, 17588750 - 17588594
Alignment:
Q  269 gtctctatgtcacatccttcatccttgtcagcccaaaacaattgccacctcaaattgttaacaatcaattcatttttaacgtcatggactaaaatactaa 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  17588750 gtctctatgtcacatccttcatccttgtcagcccaaaacaattgccacctcaaattgttaacaatcatttcatttctaacgtcatggactaaaatactaa 17588651  T
Q  369 cggaggtacacatcaaatgactattttgtattttatcctgagtcatggatgatgatg 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17588650 cggaggtacacatcaaatgactattttgtattttatcctgagtcatggatgatgatg 17588594  T

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Target: chr1; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 17588961 - 17588815
Alignment:
Q  63 aattagcaacacttcgttgagacgagtttgcaccaatttccatcatcatgtgattcgattttgatattcaatggaagattcaattttggtattcaatgaa 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17588961 aattagcaacacttcgttgagacgagtttgcaccaatttccatcatcatgtgattcgattttggtattcaatggaagattcaattttggtattcaatgaa 17588862  T
Q  163 gtttgcaccaacaaatttgattttgaacaaaagagaggattaaatga 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17588861 gtttgcaccaacaaatttgattttgaacaaaagagaggattaaatga 17588815  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 17589143 - 17589096
Alignment:
Q  18 aaatggaatgtggatttgtggctatagttatgtcaaagtggcagtaat 65  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17589143 aaatggaatgtggatttgtggctatagttctgtcaaagtggcagtaat 17589096  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 42591991 - 42592043
Alignment:
Q  147 tttggtattcaatgaagtttgcaccaacaaatttgattttgaacaaaagagag 199  Q
    ||||||||| |||| |||||||| |||||| || |||||| ||||||||||||    
T  42591991 tttggtatttaatggagtttgcaacaacaatttcgattttcaacaaaagagag 42592043  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 52968619 - 52968571
Alignment:
Q  367 aacggaggtacacatcaaatgactattttgtattttatcctgagtcatg 415  Q
    |||||||||||||||| | |||  ||||||||||||||| |||||||||    
T  52968619 aacggaggtacacatccagtgatcattttgtattttatcttgagtcatg 52968571  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 44617499 - 44617387
Alignment:
Q  67 agcaacacttcgttgagacgagtttgcaccaatttccatcatcatgtgattcgattttgatattcaatggaagattcaattttggtattcaatgaagttt 166  Q
    |||||| || ||||| |||||||||| |||||  ||||||||||||||||||||||||  | ||| ||||||| ||| ||||||||| | |||| | |||    
T  44617499 agcaacgctccgttgggacgagtttgtaccaacgtccatcatcatgtgattcgattttagttttcgatggaaggttcgattttggtaataaatggatttt 44617400  T
Q  167 gcaccaacaaatt 179  Q
    |||||||||||||    
T  44617399 gcaccaacaaatt 44617387  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 413
Target Start/End: Complemental strand, 21621945 - 21621875
Alignment:
Q  343 tttaacgtcatggactaaaatactaacggaggtacacatcaaatgactattttgtattttatcctgagtca 413  Q
    |||||| ||| |||||||| |  ||||||| || |||||  |||||||||||||||||| |||||||||||    
T  21621945 tttaacatcagggactaaagtgataacggaagtgcacattcaatgactattttgtatttaatcctgagtca 21621875  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 39138394 - 39138477
Alignment:
Q  67 agcaacacttcgttgagacgagtttgcaccaatttccatcatcatgtgattcgattttgatattcaatggaagattcaattttg 150  Q
    ||||||||||||||| ||||| ||||||||||    ||||||||||||||||||||| | | || ||| ||||||| |||||||    
T  39138394 agcaacacttcgttgggacgaatttgcaccaacacacatcatcatgtgattcgatttcggtgtttaatagaagatttaattttg 39138477  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 12011218 - 12011293
Alignment:
Q  67 agcaacacttcgttgagacgagtttgcaccaatttccatcatcatgtgattcgattttgatattcaatggaagatt 142  Q
    |||||||||| |||  ||||||||||||||||  |||||||| |||||||||||||||| | || |||| ||||||    
T  12011218 agcaacactttgttcggacgagtttgcaccaacatccatcataatgtgattcgattttggtgtttaatgtaagatt 12011293  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 12003987 - 12003904
Alignment:
Q  67 agcaacacttcgttgagacgagtttgcaccaatttccatcatcatgtgattcgattttgatattcaatggaagattcaattttg 150  Q
    |||||||||| |||| ||| ||||||||||||   |||||||||||| |||| |||||| | || ||||||| ||| |||||||    
T  12003987 agcaacactttgttgggacaagtttgcaccaacgcccatcatcatgtaattcaattttggtgtttaatggaatatttaattttg 12003904  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 12010458 - 12010383
Alignment:
Q  67 agcaacacttcgttgagacgagtttgcaccaatttccatcatcatgtgattcgattttgatattcaatggaagatt 142  Q
    |||||||||| |||| ||| ||||||||||||   ||||||||| || ||||||||||| | || |||||||||||    
T  12010458 agcaacactttgttgggacaagtttgcaccaacgcccatcatcaagtaattcgattttggtgtttaatggaagatt 12010383  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 12004702 - 12004762
Alignment:
Q  67 agcaacacttcgttgagacgagtttgcaccaatttccatcatcatgtgattcgattttgat 127  Q
    |||||||||| |||| || ||||||| || ||  ||||||||||||| |||||||||||||    
T  12004702 agcaacactttgttgggaggagtttgtactaacatccatcatcatgtaattcgattttgat 12004762  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 34173672 - 34173597
Alignment:
Q  67 agcaacacttcgttgagacgagtttgcaccaatttccatcatcatgtgattcgattttgatattcaatggaagatt 142  Q
    ||||||||||||||| || |||||||||||||  ||||||||||||| | | |||||||   || |||||||||||    
T  34173672 agcaacacttcgttgtgatgagtttgcaccaacatccatcatcatgttacttgattttggcgtttaatggaagatt 34173597  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 40206293 - 40206213
Alignment:
Q  67 agcaacacttcgttgagacgagtttgcaccaatttccatcatcatgtgattcgattttgatattcaatggaagattcaattttg 150  Q
    |||||||||| ||| |||| ||||||||||||  ||||||||   ||||||| |||||| | || ||||||||||| |||||||    
T  40206293 agcaacactttgttaagacaagtttgcaccaacatccatcat---gtgattcaattttggtgtttaatggaagatttaattttg 40206213  T

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