View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_37 (Length: 412)
Name: NF21242_low_37
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 41531166 - 41530960
Alignment:
| Q |
3 |
cgagcagaacctgtgagcagttagtgctttcaaataaggtcaatgttctctgcgatggtgtggaaggcatatattttccaagcctacacttgtaagcaca |
102 |
Q |
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| T |
41531166 |
cgagcagaaacagtgagcagttagtgctttcaaataaggtcaatgttctctgcaatggtgtggaaggcatatattttccaagcctacacttgtaagcaca |
41531067 |
T |
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| Q |
103 |
aactccatcaaaattcttggacataa-nnnnnnngtcccatcacagcttatcatttaacctgcattgtcatgtttcaaattgattaatgctgattttgaa |
201 |
Q |
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| T |
41531066 |
aactccatcaaaattcttggacataattttttttgtcctatcacagcttatcatttaacctgcattgtcatgtttcaaattgattaatgctgattttgaa |
41530967 |
T |
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| Q |
202 |
tgtaccg |
208 |
Q |
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||||||| |
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| T |
41530966 |
tgtaccg |
41530960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 328 - 401
Target Start/End: Complemental strand, 41530840 - 41530767
Alignment:
| Q |
328 |
agagttgtgtgcaagtgtggtttttgtgggacagaaaagcaagcgcttagtgaatgggaacgacacacaggttc |
401 |
Q |
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| T |
41530840 |
agagttgtgtgcaagtgtggtttttgtgggacagaaaagcaagcgcttagtgaatgggaacgacacacaggttc |
41530767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 15626123 - 15626219
Alignment:
| Q |
21 |
agttagtgctttcaaataaggtcaatgttctctgcgatggtgtggaaggcatatattttccaagcctacacttgtaagcacaaactccatcaaaatt |
117 |
Q |
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| T |
15626123 |
agttagtacttccaaagaaggtcactgttctctgcaatagtgtggaaggcatatattttccaagccttcacttgtaagcataaactcattcaaaatt |
15626219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 816572 - 816656
Alignment:
| Q |
24 |
tagtgctttcaaataaggtcaatgttctctgcgatggtgtggaaggcatatattttccaagcctacacttgtaagcacaaactcc |
108 |
Q |
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|||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||||| | || |||||||||||| ||||||| |
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| T |
816572 |
tagtgcttccaaagaaggtcactgttctctgcaatggtgtggaaggcatatattttccatgtcttcacttgtaagcataaactcc |
816656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 817375 - 817448
Alignment:
| Q |
328 |
agagttgtgtgcaagtgtggtttttgtgggacagaaaagcaagcgcttagtgaatgggaacgacacacaggttc |
401 |
Q |
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| T |
817375 |
agagttatgtgcaagtgtgatttttgtgggactgaaaaacaggcacttagtgaatgggaacgccacacaggttc |
817448 |
T |
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