View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_39 (Length: 405)
Name: NF21242_low_39
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 32110546 - 32110165
Alignment:
| Q |
19 |
aagtatgccttacaagttggtgtgcttcaaccatatgaaaaagaacaagtgagaggagaagtgatgaaacaatgaagcttctagagaatgccatagtgtg |
118 |
Q |
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| T |
32110546 |
aagtatgccttacaagttggtgtgcttcaaccatatgaaaaagaacaagtgagaggagaagtgatgaaacaatgaagcttctagagaatgccatcgtatg |
32110447 |
T |
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| Q |
119 |
tggaggattcaagtactatatgatatgaagtgagattacnnnnnnngcttataagtatttatagaaagagtacgtgaaacgtgttcatgaatgattagat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32110446 |
tggaggattcaagtactatatgatatgaagtgagattacaaagaa-gcttataagtatttatagaaagagtacgtgaaatgtgttcatgaatgattagat |
32110348 |
T |
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| Q |
219 |
agatatacacaatgaattggatgccaaacaatgagagcacagcgaaggtgctgcttttgacaggctaatccagcacataaagatgaaccccacaaaacgc |
318 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32110347 |
a--tatacacaatgaattggatgccaaacaatgagagcacagcgaaggtgctgcttttgacaggctaatccagcacaaaaagatgaaccccacaaaacgc |
32110250 |
T |
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| Q |
319 |
ggtgctactacaatatacaaacgataactaaaattgtagttagtcttattttaattttttgatatacttcagtataatctaccca |
403 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
32110249 |
ggtgctactacaatatacaaaagataactaaaattgtagttagtcttattttaattttttgatatacttcattataatgtaccca |
32110165 |
T |
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