View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_4 (Length: 631)
Name: NF21242_low_4
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 5230904 - 5230583
Alignment:
| Q |
18 |
atctagcaactgagtatgccaagtcttcagttggtctatgagatatagcaccaccgaaatcagtgtacctatagaataggtaagataaaaattaaacata |
117 |
Q |
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| T |
5230904 |
atctagcaactgagtatgccaagtcttcagttggtctatgagatatagcaccaccgaaatcagtgtacctacagaataggtaacataaaaattaaacata |
5230805 |
T |
|
| Q |
118 |
tgatcccaaatgaaatatttatagctttaaattaatggtagcatttgaatgagcatgaattaccagccagaccaattctcagtccacattttgggtttaa |
217 |
Q |
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| T |
5230804 |
tgatcccaaatgaaatatttatagctttaaattaatggtagcatttgaatgagcatgacttaccagccagaccaattctcagtccacattttgggtttaa |
5230705 |
T |
|
| Q |
218 |
agttctcgttgggagtgaaattttcacagtaatatccattgcaagtgtcaatctacaacatagttcagtaaatatatatcaaacagagaaagatgaaagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5230704 |
agttctcgttgggagtgaaattttcacagtaatatccattgcaagtgtcaatctacaacatagttcagtaaatatatatcaaacagagaaagatgaaagt |
5230605 |
T |
|
| Q |
318 |
aagaataaattaatattagttt |
339 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
5230604 |
aagaataaattaatattagttt |
5230583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 382 - 617
Target Start/End: Complemental strand, 5230581 - 5230346
Alignment:
| Q |
382 |
taaacacacacattaacatgcaacacatcatctttaaagcaatgactccgacaaatatgtctgacacgacacagacacggacacaccaacaatgctaatg |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
5230581 |
taaacacacacattaacatgcaacacatcatctttaaagcaatgactccgacaaatatgtctgacacgacacagacacagacacaccaacaatgttaatg |
5230482 |
T |
|
| Q |
482 |
taaacttacaacgggatcaggggcgtcttcttgcttgcacatgtcccaaggtacaccagtatctagacctacagccatttgagcagcccattttgtgtaa |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5230481 |
taaacttacaacgggatcaggggcgtcttcttgcttgcacatgtcccaaggtacaccagtatctagacctacagccatttgagcagcccattttgtgtaa |
5230382 |
T |
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| Q |
582 |
gcctttccaggagcaccaatttcccattccacaggt |
617 |
Q |
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| T |
5230381 |
gcctttccaggagcaccaatttcccattccacaggt |
5230346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 486 - 613
Target Start/End: Complemental strand, 17125543 - 17125416
Alignment:
| Q |
486 |
cttacaacgggatcaggggcgtcttcttgcttgcacatgtcccaaggtacaccagtatctagacctacagccatttgagcagcccattttgtgtaagcct |
585 |
Q |
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||||||| |||||||| || ||||||||||| ||||| |||| || |||||||| | ||| |||||||||||||||| | |||||| ||||||| | |
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| T |
17125543 |
cttacaattggatcaggagcatcttcttgcttacacataacccatggaacaccagtgtttagtcctacagccatttgagaaaaccatttggtgtaagatt |
17125444 |
T |
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| Q |
586 |
ttccaggagcaccaatttcccattccac |
613 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
17125443 |
ttccaggtgcaccaatttcccattccac |
17125416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 17126333 - 17126237
Alignment:
| Q |
178 |
taccagccagaccaattctcagtccacattttgggtttaaagttctcgttgggagtgaaattttcacagtaatatccattgcaagtgtcaatctaca |
274 |
Q |
| |
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|||||||||| |||||| || ||||||||||| ||||| |||||| |||||||| ||| |||||||||||||||||||| || || |||||||||| |
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| T |
17126333 |
taccagccagtccaattttctgtccacatttttggtttgtagttcttgttgggagagaagttttcacagtaatatccattacaggtatcaatctaca |
17126237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 604
Target Start/End: Original strand, 42989289 - 42989409
Alignment:
| Q |
484 |
aacttacaacgggatcaggggcgtcttcttgcttgcacatgtcccaaggtacaccagtatctagacctacagccatttgagcagcccattttgtgtaagc |
583 |
Q |
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|||||||||| |||||||| || || ||||||||||||||| ||| || || || ||| | || ||||||||||| | || |||||||| ||||| | |
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| T |
42989289 |
aacttacaacaggatcaggagcatcatcttgcttgcacatgatccacggaactccggtaccaagtcctacagccatatctgctgcccatttggtgtagga |
42989388 |
T |
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| Q |
584 |
ctttccaggagcaccaatttc |
604 |
Q |
| |
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|| ||||||||||||||||| |
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| T |
42989389 |
tttaccaggagcaccaatttc |
42989409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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