View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_40 (Length: 405)
Name: NF21242_low_40
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 45248469 - 45248729
Alignment:
| Q |
19 |
cacagattaggatttcagaacaagagagaccaacgttaacattagaccttattatagagttgaaccccaaaacctcattctcatgatgatcaaataaaac |
118 |
Q |
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| T |
45248469 |
cacagattaggatttcagaacaagagagaccaacgttaacattagaccttattatagagttgaaccccaaaacctcattctcatgatgatcaaataaa-- |
45248566 |
T |
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| Q |
119 |
agcatcagcatttgaattcacagccattaaaacagaaaaccacctataacacaaaacacaaacaaacatgtgcatgcattcatgcattcatatttgaact |
218 |
Q |
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| T |
45248567 |
----tcagcatttgaattcacagccattaaaacagaaaaccacctataacacaaaacacaaacaaacatgtgcatgcattcatgcattcatatttgaact |
45248662 |
T |
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| Q |
219 |
gtataaattataaaacctttataataataaaacagataatatgaaggatgagaaattctaacctgtt |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45248663 |
gtataaattataaaacctttataataataaaacagataatatgaaggatgagaaattctaacctgtt |
45248729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 44864027 - 44863757
Alignment:
| Q |
19 |
cacagattaggatttcagaacaagagagaccaacgttaacattagaccttattatagagttgaaccccaaaacctcattctcatgatgatcaaataaaac |
118 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
44864027 |
cacagattagggtttgagaacaagagagaccaacgttaacattaaaccttattatagagttaaaccccaaaaccccattctcatgatgatcaaataaaac |
44863928 |
T |
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| Q |
119 |
agcatcagcatttgaattcacagccattaaaacagaaaaccacctataac-----acaaaacacaaacaaacatgtgcatgcattcatgcattcatattt |
213 |
Q |
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| T |
44863927 |
agcatcagcatttaaattcatagctatagtaacagaaaaccacctataacacaacacaaaacacaaacaaacatgtgcatg--tacatgcgttcatattt |
44863830 |
T |
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| Q |
214 |
gaactgtataaattataaaacctttataataataaaaca-gataatatgaaggatgagaaattctaacctgtt |
285 |
Q |
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||| ||||||||| |||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||||| |
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| T |
44863829 |
gaaatgtataaatcataaaacctttataatgataaaacaggatcatatgaaggatgagaaattcaaacctgtt |
44863757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 282 - 388
Target Start/End: Original strand, 45248752 - 45248858
Alignment:
| Q |
282 |
tgttgtttgtttgagttgagttgggttgtatgaagaatggttacttcttttgttgttgagaaaatcttggtttgttctttctttgaatacaaatcttggt |
381 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45248752 |
tgttgtttgtttgagttgagttgggttgtttgaagaatggttacttcttttgttgttgagaaaatcttggttcgttctttctttgaatacaaatcttggt |
45248851 |
T |
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| Q |
382 |
gctttct |
388 |
Q |
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||||||| |
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| T |
45248852 |
gctttct |
45248858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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