View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_low_46 (Length: 390)

Name: NF21242_low_46
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_low_46
NF21242_low_46
[»] chr3 (8 HSPs)
chr3 (1-247)||(5670299-5670545)
chr3 (1-247)||(5679792-5680038)
chr3 (1-186)||(5693968-5694153)
chr3 (286-377)||(5736219-5736310)
chr3 (286-377)||(5773331-5773422)
chr3 (46-247)||(5793533-5793748)
chr3 (289-377)||(5697569-5697660)
chr3 (207-247)||(5694151-5694191)
[»] chr8 (2 HSPs)
chr8 (310-377)||(41482134-41482203)
chr8 (310-377)||(41485400-41485469)
[»] chr4 (2 HSPs)
chr4 (150-205)||(9430903-9430958)
chr4 (149-195)||(9420194-9420240)
[»] chr2 (1 HSPs)
chr2 (314-377)||(45385654-45385716)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 5670299 - 5670545
Alignment:
Q  1 tagggaaacacaaaatctctgcagaaatggagcagaacctgaaaaaccagcagcagatacagaagctgcagagctggaataaccagaagaagctctaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  5670299 tagggaaacacaaaatctctgcagaaatggagcagaacctgaaaaaccagcagaagatacagaagctgcagagctggaataaccagaagaacctctaaaa 5670398  T
Q  101 gacacaccctctacctcatgaggcaatcaccagtcataaaatatggacggggtttccttcaacctcattaaactccatctccaagaaacccccttaatct 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5670399 gacacaccctctacctcatgaggcaatcaacagtcataaaatatggacggggtttccttcaacctcattaaactccatctccaagaaacccccttaatct 5670498  T
Q  201 catcacagatctttaccgccactttactaaaatttataaaaattctc 247  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  5670499 catcacagatctttaccgccactttcctaaaatttataaaaattctc 5670545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 5679792 - 5680038
Alignment:
Q  1 tagggaaacacaaaatctctgcagaaatggagcagaacctgaaaaaccagcagcagatacagaagctgcagagctggaataaccagaagaagctctaaaa 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  5679792 tagggaaacacgaaatctctgcagaaatggagcagaacctgaaaaaccagcagcagatacagaagctgcagagctggaataaccagaagaacctcgaaaa 5679891  T
Q  101 gacacaccctctacctcatgaggcaatcaccagtcataaaatatggacggggtttccttcaacctcattaaactccatctccaagaaacccccttaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  5679892 gacacaccctctacctcatgaggcaatcaccagtcataaaataaggacggggtttccttcaacctcattaaactccatctccaagaaaccaccttaattt 5679991  T
Q  201 catcacagatctttaccgccactttactaaaatttataaaaattctc 247  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  5679992 catcacagatctttaccgccactttcctaaaatttataaaaattctc 5680038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 5693968 - 5694153
Alignment:
Q  1 tagggaaacacaaaatctctgcagaaatggagcagaacctgaaaaaccagcagcagatacagaagctgcagagctggaataaccagaagaagctctaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5693968 tagggaaacacaaaatctctgcagaaatggagcagaacctgaaaaaccagcagcagatacagaagctgcagagctggaataaccagaagaacctctaaaa 5694067  T
Q  101 gacacaccctctacctcatgaggcaatcaccagtcataaaatatggacggggtttccttcaacctcattaaactccatctccaaga 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5694068 gacacaccctctacctcatgaggcaatcaccagtcataaaatatggacggggtttccttcagcctcattaaactccatctccaaga 5694153  T

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Target: chr3; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 286 - 377
Target Start/End: Original strand, 5736219 - 5736310
Alignment:
Q  286 gtattctctattatcttggtatagttgttgtttcccacacttcaccacaattaacatggcaaatagaaattccctgagagatgcacaggttc 377  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5736219 gtattctctattttcttggtatagttgttgtttcccacacttcaccacaattaacatggcaagtagaaattccctgagagatgcacaggttc 5736310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 286 - 377
Target Start/End: Original strand, 5773331 - 5773422
Alignment:
Q  286 gtattctctattatcttggtatagttgttgtttcccacacttcaccacaattaacatggcaaatagaaattccctgagagatgcacaggttc 377  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5773331 gtattctctattttcttggtatagttgttgtttcccacacttcaccacaattaacatggcaagtagaaattccctgagagatgcacaggttc 5773422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 46 - 247
Target Start/End: Original strand, 5793533 - 5793748
Alignment:
Q  46 accagcagcagatacagaagctgcagagctggaataaccagaagaagctctaaaagacacaccctctacctcatgaggcaat--------------cacc 131  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||  |||||||||| |||| |||||||||||||||||||              ||||    
T  5793533 accagcagcagatacagaagctgcagagctggattaaacagaagagcctctaaaagatacacactctacctcatgaggcaatcaccgggatcccaacacc 5793632  T
Q  132 agtcataaaatatggacggggtttccttcaacctcattaaactccatctccaagaaacccccttaatctcatcacagatctttac--cgccactttacta 229  Q
    | |||||||||| |||||||  |||||||||||||||||||||||||   |||||||||||||||||||||||| ||| || |||  | |||| ||  ||    
T  5793633 actcataaaataaggacggg--ttccttcaacctcattaaactccattctcaagaaacccccttaatctcatcaaagacctctaccacaccacctttgta 5793730  T
Q  230 aaatttataaaaattctc 247  Q
    ||||||||||||||||||    
T  5793731 aaatttataaaaattctc 5793748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 289 - 377
Target Start/End: Original strand, 5697569 - 5697660
Alignment:
Q  289 ttctctattatcttggtatagttgttgtttcccacacttcaccacaattaacatggcaaat---agaaattccctgagagatgcacaggttc 377  Q
    ||||||| | |||||||||| |||||||||||||||||| ||||||||||||||||||| |   |||||||||||||||||| |||||||||    
T  5697569 ttctctaatttcttggtataattgttgtttcccacactttaccacaattaacatggcaagtagaagaaattccctgagagattcacaggttc 5697660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 5694151 - 5694191
Alignment:
Q  207 agatctttaccgccactttactaaaatttataaaaattctc 247  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  5694151 agatctttaccaccactttcctaaaatttataaaaattctc 5694191  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 41482203 - 41482134
Alignment:
Q  310 ttgttgtttcccacacttcaccacaattaacatggcaaatagaaat--tccctgagagatgcacaggttc 377  Q
    ||||||||||||||||||||||||||| ||||| |||| |||||||   |||||||||||||||||||||    
T  41482203 ttgttgtttcccacacttcaccacaataaacatagcaagtagaaatcccccctgagagatgcacaggttc 41482134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 41485469 - 41485400
Alignment:
Q  310 ttgttgtttcccacacttcaccacaattaacatggcaaatagaaat--tccctgagagatgcacaggttc 377  Q
    ||||||||||| ||||||||||| ||| ||||| |||| |||||||   |||||||||||||||||||||    
T  41485469 ttgttgtttccaacacttcaccataataaacatagcaagtagaaatcccccctgagagatgcacaggttc 41485400  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 9430958 - 9430903
Alignment:
Q  150 gggtttccttcaacctcattaaactccatctccaagaaacccccttaatctcatca 205  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||| || ||||||    
T  9430958 gggttaccttcaacctcattaaagtccatctccaagaaaccacctttatttcatca 9430903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 9420240 - 9420194
Alignment:
Q  149 ggggtttccttcaacctcattaaactccatctccaagaaaccccctt 195  Q
    |||||| |||||||||||||||||| | |||||||||||||| ||||    
T  9420240 ggggttaccttcaacctcattaaaccctatctccaagaaaccacctt 9420194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 45385654 - 45385716
Alignment:
Q  314 tgtttcccacacttcaccacaattaacatggcaaatagaaattccctgagagatgcacaggttc 377  Q
    ||||||||||| ||||||| ||| ||||  |||| |||||||||||||||||||||||||||||    
T  45385654 tgtttcccacatttcaccagaat-aacaaagcaagtagaaattccctgagagatgcacaggttc 45385716  T

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