View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_47 (Length: 379)
Name: NF21242_low_47
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_47 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 34746874 - 34746517
Alignment:
| Q |
18 |
attatggtcatatgtcagatacaattttgtttgaggcacacagtgtagcatctgccgatattactctatataataagaacaagaagagtccgcaagaaat |
117 |
Q |
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| T |
34746874 |
attatggtcatatgtcagatacaattttgtttgagggacatagtgtagcatctgctgatattactttatataataagaacaagaagagtccgcaagaaat |
34746775 |
T |
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| Q |
118 |
tgggatttttgtttgtaaacttctcagtattaatccagaatgtctaaagctgtctgtacatggttgcatttcgcaggtatg-nnnnnnnacttttcttgc |
216 |
Q |
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| T |
34746774 |
tgggatttttgtttgtaaacttctcagtattaatccagaatgtctaaagctgtctgtacatggttgcatttcgcaggtatgttttttttacttttcttgc |
34746675 |
T |
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| Q |
217 |
ttcactatgtttgtgcatgattgcatttcgcaggcatattttcaatgcatatattgactagtgttctacctcctatatttgcagtcagaattgtgtaatt |
316 |
Q |
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| T |
34746674 |
ttcactatgtttg--------tgcatttcgcaagcatattttcaatgcatatattgactagagttctacctcctatatttgcagtcagaattgtgtaatt |
34746583 |
T |
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| Q |
317 |
tttcatcgaacttacttt---atcttatggacatagtctagatatattgtcctgacagcaacaatt |
379 |
Q |
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| T |
34746582 |
tttcatcaaatttactttataatcttatggacatagtctagatatattgccctaacagcaacaatt |
34746517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 34751480 - 34751336
Alignment:
| Q |
22 |
tggtcatatgtcagatacaattttgtttgaggcacacagtgtagcatctgccgatattactctatataataagaacaagaagagtccgcaagaaattggg |
121 |
Q |
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| T |
34751480 |
tggttatatgtcagatacaattttgttagaggcacatagtgtagcatttgctgatattgctctatatgatgataatgagaagagtctgcaagaaattggg |
34751381 |
T |
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| Q |
122 |
atttttgtttgtaaacttctcagtattaatccagaatgtctaaag |
166 |
Q |
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| T |
34751380 |
atttttgtttgtaaacttcttagtattaatccagaaagtctaaag |
34751336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 34759305 - 34759163
Alignment:
| Q |
27 |
atatgtcagatacaattttgtttgaggcacacagtgtagcatctgccgatattactctatataataagaacaagaagagtccgcaagaaattgggatttt |
126 |
Q |
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| T |
34759305 |
atatgtcagatacaattttgttagaggcacatagtgtaggatttgctgatattgctttatatgatgatcacgagaatagtcttaaaaaaattgggatttt |
34759206 |
T |
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| Q |
127 |
tgtttgtaaacttctcagtattaatccagaatgtctaaagctg |
169 |
Q |
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| T |
34759205 |
tgttactaaacttctctgcattaatccagaaactctaaagctg |
34759163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 34751096 - 34751024
Alignment:
| Q |
307 |
ttgtgtaatttttcatcgaacttactttatcttatggacatagtctagatatattgtcctgacagcaacaatt |
379 |
Q |
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| T |
34751096 |
ttgtgtaatttttcattaaatttactttatcttatggacatggtctctatatattgtcctaacacaaacaatt |
34751024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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