View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_low_5 (Length: 629)

Name: NF21242_low_5
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_low_5
NF21242_low_5
[»] chr8 (14 HSPs)
chr8 (1-434)||(2892014-2892447)
chr8 (99-436)||(3158138-3158475)
chr8 (203-436)||(2877820-2878056)
chr8 (82-204)||(2793994-2794116)
chr8 (525-629)||(2892538-2892642)
chr8 (82-204)||(2877636-2877752)
chr8 (525-619)||(2878124-2878218)
chr8 (203-287)||(2793842-2793926)
chr8 (1-56)||(2794134-2794189)
chr8 (1-53)||(2877555-2877607)
chr8 (1-56)||(3158514-3158569)
chr8 (552-607)||(2793726-2793781)
chr8 (315-353)||(2793793-2793831)
chr8 (157-198)||(3506811-3506852)
[»] chr1 (1 HSPs)
chr1 (157-197)||(17198200-17198240)


Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 2892014 - 2892447
Alignment:
Q  1 tcatcaagacgtgcttcgtacttaactggaaagcaataacaccaattaagatccagnnnnnnnnnnnnnnnnnnnnnnnnnatgatcatgaatgtatata 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||                         |||||||||||||||||||    
T  2892014 tcatcaagacgtgcttcgtacttaactgcaaagcaataacaccaattaagatccagaaaatgagaaaataaaaaatgaaatatgatcatgaatgtatata 2892113  T
Q  101 tttatacctaaatcataatcataatcatcaacatgttgatatttgtcatccccgggcttgagtatcttctttaccaaacctccatccttacaaatatcct 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2892114 tttatacctaaaacataatcataatcatcaacatgttgatatttgtcatccctgggcttgagtatcttctttaccaaacctccatccttacaaatatcct 2892213  T
Q  201 ccggattagtatatttaactttcttcttgtatttgctgagtggaatgatatatctagctggacaaatgaatggtaacaatatcaatcaattcaataaatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2892214 ccggattagtatatttaactttcttcttgtatttgctgagtggaatgatatatctagctggccaaatgaatggtaacaatatcaatcaattcaataaatt 2892313  T
Q  301 gaatggcacaagaaaataaaaaccttcatctaattaattgtatttgagaatagtattaccatcatattcatcagcagtagcagcagcagctttcttcttg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2892314 gaatggcacaagaaaataaaaaccttcatctaattaattgtatttgagaatagtattaccatcatattcatcagcagtaggagcagcagctttcttcttg 2892413  T
Q  401 tattgaatcaaatcccattgtgtgatgtgtgtcc 434  Q
    ||||||||||||||||||||||||||||||||||    
T  2892414 tattgaatcaaatcccattgtgtgatgtgtgtcc 2892447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 99 - 436
Target Start/End: Complemental strand, 3158475 - 3158138
Alignment:
Q  99 tatttatacctaaatcataatcataatcatcaacatgttgatatttgtcatccccgggcttgagtatcttctttaccaaacctccatccttacaaatatc 198  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3158475 tatttatacctaaaacataatcataatcatcaacatgttgatatttgtcatccccgggcttgagtatcttctttaccaaacctccatccttacaaatatc 3158376  T
Q  199 ctccggattagtatatttaactttcttcttgtatttgctgagtggaatgatatatctagctggacaaatgaatggtaacaatatcaatcaattcaataaa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3158375 ctccggattagtatatttaactttcttcttgtatttgctgagtggaatgatatatctagctggccaaatgaatggtaacaatatcaatcaattcaataaa 3158276  T
Q  299 ttgaatggcacaagaaaataaaaaccttcatctaattaattgtatttgagaatagtattaccatcatattcatcagcagtagcagcagcagctttcttct 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3158275 ttgaatggcacaagaaaataaaaaccttcatctaattaattgtatttgagaatagtattaccatcatattcatcagcagtaggagcagcagctttcttct 3158176  T
Q  399 tgtattgaatcaaatcccattgtgtgatgtgtgtccct 436  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  3158175 tgtattgaatcaaatcccattgtgtgatgtgggtccct 3158138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 203 - 436
Target Start/End: Original strand, 2877820 - 2878056
Alignment:
Q  203 ggattagtatatttaactttcttcttgtatttgctgagtggaatgatatatctagctggacaaatgaatggtaacaatatcaatcaattcaa--taaatt 300  Q
    |||||||| |||| ||||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||   ||||  |||       
T  2877820 ggattagtgtattcaactttcttcttgaaattgctgagtggcatgatatatctagctggccaaatgaatggtaacaatatgaatc---tcaacttaacaa 2877916  T
Q  301 gaatggcacaagaaaataaaaaccttcatctaattaattgtatttgagaa-----tagtattaccatcatattcatcagcagtagcagcagcagctttct 395  Q
    |||     ||| |||| ||||||||| | |||||||||||||||||||||     ||||||||||||||||||| ||||||| || ||||||||||||||    
T  2877917 gaaaaattcaataaaa-aaaaaccttaacctaattaattgtatttgagaatagaatagtattaccatcatattcttcagcagaaggagcagcagctttct 2878015  T
Q  396 tcttgtattgaatcaaatcccattgtgtgatgtgtgtccct 436  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2878016 tcttgtattgaatcaaatcccattgtgtgatgtgtgtccct 2878056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 2794116 - 2793994
Alignment:
Q  82 atgatcatgaatgtatatatttatacctaaatcataatcataatcatcaacatgttgatatttgtcatccccgggcttgagtatcttctttaccaaacct 181  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  2794116 atgatcatgaatgtatatatttatacctaaaacataatcataatcatcaaaatgttgacatttgtcatccccgggcttgagtgtcttcttcaccaaacct 2794017  T
Q  182 ccatccttacaaatatcctccgg 204  Q
    |||||||||||||||||||||||    
T  2794016 ccatccttacaaatatcctccgg 2793994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 525 - 629
Target Start/End: Original strand, 2892538 - 2892642
Alignment:
Q  525 ctcactcactttttccatacgtaagttcatcaaattgattgttagcgccgccgccagtcatttccaaatcaatcttcttttaccaaattctggaatatat 624  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2892538 ctcactcactttttccatacgtaagttcatcaaattgattgttagcgccgccgctagtcatttccaaatcaatcttcttttaccaaattctggaatatat 2892637  T
Q  625 attac 629  Q
    |||||    
T  2892638 attac 2892642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 2877636 - 2877752
Alignment:
Q  82 atgatcatgaatgtatatatttatacctaaatcataatcataatcatcaacatgttgatatttgtcatccccgggcttgagtatcttctttaccaaacct 181  Q
    |||||||||||||||| |||||||||||||| ||||      ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2877636 atgatcatgaatgtatttatttatacctaaaacata------atcatcaacatgttgatatttgtcatccccgggcttgagtatcttttttaccaaacct 2877729  T
Q  182 ccatccttacaaatatcctccgg 204  Q
    |||||||||||||||||||||||    
T  2877730 ccatccttacaaatatcctccgg 2877752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 525 - 619
Target Start/End: Original strand, 2878124 - 2878218
Alignment:
Q  525 ctcactcactttttccatacgtaagttcatcaaattgattgttagcgccgccgccagtcatttccaaatcaatcttcttttaccaaattctggaa 619  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| ||||||||  ||||||||||||||||||||| |||||||| ||||||    
T  2878124 ctcactcactttttccatacgtagattcatcaaattgattgttagcgacgccgccatacatttccaaatcaatcttcttataccaaatcctggaa 2878218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 2793926 - 2793842
Alignment:
Q  203 ggattagtatatttaactttcttcttgtatttgctgagtggaatgatatatctagctggacaaatgaatggtaacaatatcaatc 287  Q
    |||||||| |||| ||| |||||  || || || ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2793926 ggattagtgtattcaacattcttactgaatctgttgagtggaatgatatatctagctggccaaatgaatggtaacaatatcaatc 2793842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 2794189 - 2794134
Alignment:
Q  1 tcatcaagacgtgcttcgtacttaactggaaagcaataacaccaattaagatccag 56  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  2794189 tcatcaagacgtgcttcgtacttaactgcaaagcaataacaacaattaagatccag 2794134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2877555 - 2877607
Alignment:
Q  1 tcatcaagacgtgcttcgtacttaactggaaagcaataacaccaattaagatc 53  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  2877555 tcatcaagacgtgcttcatacttaactgcaaagcaataacaccaattaagatc 2877607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3158569 - 3158514
Alignment:
Q  1 tcatcaagacgtgcttcgtacttaactggaaagcaataacaccaattaagatccag 56  Q
    ||||||||| |||||||||||||||||| | |||||||||||||||||||||||||    
T  3158569 tcatcaagaagtgcttcgtacttaactgcagagcaataacaccaattaagatccag 3158514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 552 - 607
Target Start/End: Complemental strand, 2793781 - 2793726
Alignment:
Q  552 catcaaattgattgttagcgccgccgccagtcatttccaaatcaatcttcttttac 607  Q
    ||||||||| ||||||||||||| |||||  |||||||||||||||||||||||||    
T  2793781 catcaaattcattgttagcgccgacgccatacatttccaaatcaatcttcttttac 2793726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 2793831 - 2793793
Alignment:
Q  315 aataaaaaccttcatctaattaattgtatttgagaatag 353  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  2793831 aataaaaaccttaatctaattaattgtatttgagaatag 2793793  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 3506811 - 3506852
Alignment:
Q  157 cttgagtatcttctttaccaaacctccatccttacaaatatc 198  Q
    ||||||||||||||||| ||||||||||||||| || |||||    
T  3506811 cttgagtatcttctttaacaaacctccatccttgcatatatc 3506852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 17198200 - 17198240
Alignment:
Q  157 cttgagtatcttctttaccaaacctccatccttacaaatat 197  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  17198200 cttgagtatcttctttaacaaacctccatccttacatatat 17198240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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