View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_50 (Length: 371)
Name: NF21242_low_50
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 41013494 - 41013354
Alignment:
| Q |
19 |
aaaatttgattcaaaaatttataaatgtagttcaaaaatataaacgatggaannnnnnnactattcaattcaaacaagaatatttaaaaataaaagaagg |
118 |
Q |
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| T |
41013494 |
aaaatttgatccaaaaatttataaatgtagtccaaaaatataaacgatggaatttttgtactattcaattcaaacaagaatatttaaaaataaaagaagg |
41013395 |
T |
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| Q |
119 |
gtcttattaaccagggacactggagcactagttaaagaact |
159 |
Q |
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| T |
41013394 |
gtcttgttaacctgggacactggagcactggttaaagaact |
41013354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 194 - 362
Target Start/End: Complemental strand, 41013296 - 41013127
Alignment:
| Q |
194 |
aagaagaatacacaattttcaagacaaannnnnnnnnattaatttcttaatcgatgcacggaggcaccgattaatatttcccataaaagaatgggaactt |
293 |
Q |
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| T |
41013296 |
aagaagaatacacaattttcaagacaaaattttctttattaattccttaaccgatgcacggaagcaccgattaatatttcccataaaagaataggaactt |
41013197 |
T |
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| Q |
294 |
tgtggggttttag-nnnnnnnnnnnncctttcatttttggtagaaacgtttagaatatgatgtagaataa |
362 |
Q |
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| T |
41013196 |
tgtggggttttagtttttttttttttcctttcatttttggtagaaacgtttagaatatgatgtagaataa |
41013127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 41013109 - 41013013
Alignment:
| Q |
19 |
aaaatttgattcaaaaatttataaatgtagttcaaaaatataaacgatggaannnnnnnactattcaattcaaacaagaatatttaaaaataaaagaa |
116 |
Q |
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| T |
41013109 |
aaaattttatccaaaaatttataaaagtagtccaaaaatataaacgatg-aaactagttacaactcaattcaaacaagaatatttaaaaataaaagaa |
41013013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 41013548 - 41013512
Alignment:
| Q |
326 |
tttttggtagaaacgtttagaatatgatgtagaataa |
362 |
Q |
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| T |
41013548 |
ttttcggtagaaacgtttagaatatgatgtagaataa |
41013512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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