View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21242_low_51 (Length: 369)
Name: NF21242_low_51
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_51 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 21 - 354
Target Start/End: Complemental strand, 39034254 - 39033921
Alignment:
| Q |
21 |
atttgatttgtaacaaagattaagaaacaattgagatttgttattgatgtcttcaactagaagtatacatagctacacataaatttacgatattatttgt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39034254 |
atttgatttgtaacaaagattaagaaacaattgagatttgttattgatgtcttcaactagaagtatacatagctacacataaatttacgatattatttgt |
39034155 |
T |
|
| Q |
121 |
tgtgttattgtaggcatatggtgcactaattgtccttgcttcattgacaccatgctggtatctcatggtcacacatattgagaaaagtgtgaatttgcac |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39034154 |
tgtgttattgtaggcatatggtgcattaattgtccttgcttctttgacaccatgctggtatctcatggtcacacatattgagaaaagtgtgaatttgcac |
39034055 |
T |
|
| Q |
221 |
tcagcaaatattgtgtcacaattgcaatcagaaattgagtactcagctgaactattgcatccaatgaaatcatcatcaacaaatttatctacattattga |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39034054 |
tcagcaaatattgtgtcacaattgcaatcagaaattgagtactcagctgaactattgcatccaatgaaatcatcatcaacaaatttatctacattattga |
39033955 |
T |
|
| Q |
321 |
gctcaacccttaattctactaatatcaccttctc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
39033954 |
gctcaacccttaattctactaatatcaccttctc |
39033921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 128 - 342
Target Start/End: Complemental strand, 40899594 - 40899380
Alignment:
| Q |
128 |
ttgtaggcatatggtgcactaattgtccttgcttcattgacaccatgctggtatctcatggtcacacatattgagaaaagtgtgaatttgcactcagcaa |
227 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||||||||||| |||||| ||||||| |||||||| |||||| | ||||||| ||||| || |
|
|
| T |
40899594 |
ttgtaggcatatggtgcactgataactcttatctcattgacaccatgttggtatgtcatggtaacacatatcgagaaacaagcgaatttgagctcagaaa |
40899495 |
T |
|
| Q |
228 |
atattgtgtcacaattgcaatcagaaattgagtactcagctgaactattgcatccaatgaaatcatcatcaacaaatttatctacattattgagctcaac |
327 |
Q |
| |
|
||||||| | ||| | |||||||||||| |||||||||||||||| ||||| || |||||||||||||| ||||||||| | | ||| ||||| |||| |
|
|
| T |
40899494 |
atattgtaacccaactccaatcagaaattaagtactcagctgaactgttgcacccgatgaaatcatcatcgacaaatttagcaagattgttgagttcaag |
40899395 |
T |
|
| Q |
328 |
ccttaattctactaa |
342 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
40899394 |
acttgattctactaa |
40899380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University