View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_52 (Length: 366)
Name: NF21242_low_52
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 40461427 - 40461095
Alignment:
| Q |
13 |
aatatggaggtaattccaagtcaactttttcgatttaatcgattgaactgagaatatactagttagttagttggtttaatctcgattgtattgtagtctg |
112 |
Q |
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| T |
40461427 |
aatatggaggtaattccaagccaactttttcgatttaatcgattgaactgagaatatactagttagttagttggtttaatctcgattgtattgtagtctg |
40461328 |
T |
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| Q |
113 |
attgaatcaagttaatctaagattgaaccgcattaaatcggttgaatcgcggttgattcaattaatttttattttgtgtattcttttattgaaccataac |
212 |
Q |
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| T |
40461327 |
attgaatcaagttaatctaagattgaaccgcattaaatcggttgaatcgcggttgattcaattaatttttattttgtgtattcttttattgaaccataac |
40461228 |
T |
|
| Q |
213 |
ccgaattttcaccggttcttcaagannnnnnnagaattagttttcattcttttggtttcattcatgtaggagtatttcccacagcatgaaagagttgcct |
312 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40461227 |
cctaattttcaccggttcttcaagatttttttagaattagttttcattcttttggtttcattcatgtaggagtatttcccacagcatgaaagagttgcct |
40461128 |
T |
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| Q |
313 |
ccaagctaagctgggaaaatgaacagctagatt |
345 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
40461127 |
ccaagctaagctgggaaaatgaacagctagatt |
40461095 |
T |
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