View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_55 (Length: 359)
Name: NF21242_low_55
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 151 - 340
Target Start/End: Complemental strand, 27083842 - 27083653
Alignment:
| Q |
151 |
aaccgcaaagaacaatcagttcagcgataaacttcatcaacactaagaaatcgaacacagaaaagagattaagagatgaacggatttcatttgaagctca |
250 |
Q |
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| T |
27083842 |
aaccgcaaagaacaatcagttcagcgataaacttcatcaacactaagaaatcgaacacagaaaagagattaagagatgaacggatttcatttgaagctca |
27083743 |
T |
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| Q |
251 |
tacgattcatgcaatctaaatactaaaacaattcaacttcgaacaaatcaaaaattaaagtcaacaaaacgttcatatcactgcaatttt |
340 |
Q |
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| T |
27083742 |
tacgattcatgcaatctaaatactaaaacaattcaacttcgaacaaatcaaaaattaaagtcaacaaaacgttcatatcactgcaatttt |
27083653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 340
Target Start/End: Complemental strand, 27083397 - 27083298
Alignment:
| Q |
234 |
atttcatttgaagctcatacgattcatgcaatctaaatactaaaacaattcaacttcgaacaaatcaaaaattaaagtcaacaaaacgttcatatcactg |
333 |
Q |
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| T |
27083397 |
atttcatttgaagctcatacgattcatgcaatctaaatactaaaacgattcaacctctaacaaatc-------aaagtcaacaaaacgttcatatcactt |
27083305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 27083893 - 27083850
Alignment:
| Q |
297 |
atcaaaaattaaagtcaacaaaacgttcatatcactgcaatttt |
340 |
Q |
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| T |
27083893 |
atcaaaaatcaaagtcaacaaaatgttcatatcacttcaatttt |
27083850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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