View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_56 (Length: 358)
Name: NF21242_low_56
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 39119729 - 39120078
Alignment:
| Q |
1 |
attaggttctttgattcgtcgnnnnnnngcgaatggattgctgttagttacttgtacaagcatgatcatgccggggtgcgtgattatctttgtaatagaa |
100 |
Q |
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| T |
39119729 |
attaggttctttgattcatcgtttttttgcgaatggattgctgttagttacttgtacaagcatgatcatgccggggtgcgtgattatctttgtaatagaa |
39119828 |
T |
|
| Q |
101 |
tgtatactcttcccttgacagggcttgagagttatttgtttcagatttgttatatgatgatacataagcctagtccgtcgttggataagtttgtcataga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39119829 |
tgtatactcttcccttgacagggcttgagagttatttgtttcagatttgttatatgatgatacataagcctagtccgtcgttggataagtttgtcataga |
39119928 |
T |
|
| Q |
201 |
tatgtgttccaagtcgcttaagattgcattgaaagtgcattggtttttgatggcggagttggaggattctgatgataatgacgggattagtaggattcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39119929 |
tatgtgttccaagtcgcttaagattgcattgaaagtgcattggtttttgatggcggagttggaggattctgatgataatgacgggattagtaggattcag |
39120028 |
T |
|
| Q |
301 |
gagaagtgtcagattgcagctactttgatgggtgagtggccgcctttgat |
350 |
Q |
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| T |
39120029 |
gagaagtgtcagattgcagctactttgatgggtgagtggccgcctttgat |
39120078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 34 - 350
Target Start/End: Complemental strand, 43922842 - 43922532
Alignment:
| Q |
34 |
tggattgctgttagttacttgtacaagcatgatcatgccggggtgcgtgattatctttgtaatagaatgtatactcttcccttgacagggcttgagagtt |
133 |
Q |
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| T |
43922842 |
tggattgctgttagttacttgtacaagcatgatcatgcgggagtgcgcaattatctttgtaatcgaatgtacacacttcctttgcaaggaattgagggtt |
43922743 |
T |
|
| Q |
134 |
atttgtttcagatttgttatatgatgatacataagcctagtccgtcgttggataagtttgtcatagatatgtgttccaagtcgcttaagattgcattgaa |
233 |
Q |
| |
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|||||||||| | ||||| |||| |||| |||| || | || ||||||||||||||||| |||||| | || || ||||| ||||||||||| ||||| |
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| T |
43922742 |
atttgtttcaagtgtgttacatgacgatatataaaccgaatcaatcgttggataagtttgttatagatgtatgctcgaagtcacttaagattgctttgaa |
43922643 |
T |
|
| Q |
234 |
agtgcattggtttttgatggcggagttggaggattctgatgataatgacgggattagtaggattcaggagaagtgtcagattgcagctactttgatgggt |
333 |
Q |
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||||||||||||||| |||| ||| | ||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| || || |||||||| |
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| T |
43922642 |
ggtgcattggtttttgttggctgagcttgag------gatgacaatgatgggattagtaggattcaagagaagtgtcagattgctgccacattgatgggg |
43922549 |
T |
|
| Q |
334 |
gagtggccgcctttgat |
350 |
Q |
| |
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|||||||| || ||||| |
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|
| T |
43922548 |
gagtggccacccttgat |
43922532 |
T |
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