View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_low_58 (Length: 345)

Name: NF21242_low_58
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_low_58
NF21242_low_58
[»] chr7 (17 HSPs)
chr7 (6-339)||(24442661-24442997)
chr7 (1-333)||(31189654-31189985)
chr7 (102-333)||(10666445-10666678)
chr7 (108-333)||(19392817-19393041)
chr7 (135-201)||(18258539-18258605)
chr7 (135-333)||(41680383-41680582)
chr7 (150-289)||(34129305-34129445)
chr7 (76-333)||(19231576-19231836)
chr7 (142-291)||(18256990-18257140)
chr7 (6-62)||(15730714-15730771)
chr7 (135-220)||(28131364-28131449)
chr7 (6-62)||(48807801-48807858)
chr7 (135-174)||(8465847-8465886)
chr7 (146-333)||(47166286-47166473)
chr7 (272-334)||(15168848-15168909)
chr7 (135-173)||(18561993-18562031)
chr7 (142-187)||(19389377-19389422)
[»] chr4 (24 HSPs)
chr4 (10-334)||(19374033-19374355)
chr4 (28-334)||(9538646-9538953)
chr4 (6-314)||(32637191-32637499)
chr4 (76-333)||(11421675-11421930)
chr4 (76-291)||(19363138-19363353)
chr4 (102-197)||(30039886-30039981)
chr4 (135-333)||(34976240-34976439)
chr4 (135-333)||(4546751-4546950)
chr4 (146-333)||(28917201-28917389)
chr4 (135-220)||(9488348-9488433)
chr4 (135-331)||(15462191-15462388)
chr4 (233-333)||(1942378-1942476)
chr4 (6-62)||(4675233-4675290)
chr4 (6-62)||(5871377-5871434)
chr4 (28-114)||(10725215-10725303)
chr4 (28-114)||(10938984-10939072)
chr4 (6-62)||(18164123-18164180)
chr4 (6-62)||(20244898-20244955)
chr4 (4-95)||(21161389-21161481)
chr4 (10-62)||(3356207-3356260)
chr4 (107-172)||(5524175-5524239)
chr4 (137-186)||(35224504-35224553)
chr4 (290-334)||(5617082-5617126)
chr4 (230-333)||(11483317-11483419)
[»] chr3 (14 HSPs)
chr3 (6-334)||(26816979-26817318)
chr3 (6-168)||(15538363-15538526)
chr3 (6-102)||(4471739-4471835)
chr3 (146-333)||(25978153-25978341)
chr3 (92-291)||(14147748-14147948)
chr3 (76-333)||(21399480-21399742)
chr3 (137-333)||(15316593-15316789)
chr3 (135-333)||(15845951-15846150)
chr3 (6-62)||(12300871-12300928)
chr3 (6-62)||(12332172-12332229)
chr3 (136-179)||(13517763-13517806)
chr3 (232-333)||(21034926-21035026)
chr3 (76-199)||(28088936-28089061)
chr3 (233-334)||(15538223-15538325)
[»] chr5 (19 HSPs)
chr5 (131-316)||(20099716-20099901)
chr5 (101-264)||(5098404-5098567)
chr5 (101-201)||(39428260-39428361)
chr5 (107-333)||(39535873-39536096)
chr5 (146-333)||(12764416-12764603)
chr5 (36-134)||(20084433-20084533)
chr5 (146-333)||(9811159-9811346)
chr5 (146-289)||(12703400-12703544)
chr5 (33-98)||(28719001-28719066)
chr5 (107-174)||(28719091-28719159)
chr5 (147-333)||(20941715-20941902)
chr5 (135-333)||(31097504-31097703)
chr5 (6-62)||(24932590-24932647)
chr5 (230-333)||(22941939-22942041)
chr5 (230-333)||(26245791-26245892)
chr5 (8-62)||(12788949-12789004)
chr5 (146-200)||(25804811-25804865)
chr5 (146-174)||(7864862-7864890)
chr5 (34-98)||(31651078-31651142)
[»] chr2 (8 HSPs)
chr2 (6-261)||(37443927-37444175)
chr2 (10-288)||(15341332-15341612)
chr2 (119-291)||(24763072-24763245)
chr2 (230-339)||(29801154-29801262)
chr2 (101-291)||(19617162-19617354)
chr2 (107-200)||(24228600-24228694)
chr2 (230-334)||(20686933-20687037)
chr2 (101-201)||(32739376-32739476)
[»] scaffold0111 (1 HSPs)
scaffold0111 (76-331)||(27232-27483)
[»] chr6 (14 HSPs)
chr6 (16-291)||(19734543-19734818)
chr6 (133-333)||(19219210-19219408)
chr6 (232-334)||(10358567-10358669)
chr6 (16-163)||(21996674-21996820)
chr6 (229-291)||(19735031-19735093)
chr6 (8-116)||(22559486-22559595)
chr6 (229-291)||(21995687-21995749)
chr6 (135-200)||(14075302-14075367)
chr6 (6-62)||(1585390-1585447)
chr6 (107-174)||(10358458-10358525)
chr6 (150-291)||(18019259-18019402)
chr6 (146-267)||(33317618-33317741)
chr6 (136-183)||(25536374-25536421)
chr6 (146-174)||(8613761-8613789)
[»] chr8 (15 HSPs)
chr8 (6-291)||(18836075-18836360)
chr8 (135-333)||(6431575-6431774)
chr8 (146-289)||(2962353-2962497)
chr8 (135-333)||(8370668-8370867)
chr8 (125-174)||(8781294-8781343)
chr8 (146-333)||(21970021-21970209)
chr8 (8-98)||(37031553-37031644)
chr8 (146-200)||(26652717-26652771)
chr8 (135-200)||(26241850-26241915)
chr8 (6-62)||(29561808-29561865)
chr8 (6-62)||(45533557-45533614)
chr8 (4-62)||(22646716-22646775)
chr8 (235-333)||(22659011-22659108)
chr8 (150-200)||(25612017-25612067)
chr8 (146-199)||(22658920-22658973)
[»] scaffold0466 (1 HSPs)
scaffold0466 (76-333)||(10240-10497)
[»] scaffold0023 (1 HSPs)
scaffold0023 (1-339)||(108405-108743)
[»] scaffold0086 (1 HSPs)
scaffold0086 (101-201)||(54585-54685)
[»] chr1 (13 HSPs)
chr1 (76-289)||(636702-636919)
chr1 (137-225)||(9916012-9916100)
chr1 (156-333)||(22613179-22613357)
chr1 (137-333)||(43801782-43801979)
chr1 (6-167)||(8728516-8728679)
chr1 (146-333)||(47666911-47667099)
chr1 (6-62)||(14482851-14482908)
chr1 (6-62)||(22240010-22240067)
chr1 (137-225)||(25662001-25662090)
chr1 (135-200)||(28134138-28134203)
chr1 (135-200)||(35936146-35936211)
chr1 (230-333)||(19705951-19706053)
chr1 (6-62)||(33283141-33283198)
[»] scaffold0112 (1 HSPs)
scaffold0112 (146-333)||(871-1059)
[»] scaffold0017 (1 HSPs)
scaffold0017 (76-333)||(128184-128444)
[»] scaffold0031 (1 HSPs)
scaffold0031 (6-165)||(39281-39440)
[»] scaffold0389 (1 HSPs)
scaffold0389 (146-333)||(850-1038)
[»] scaffold0686 (1 HSPs)
scaffold0686 (135-333)||(7929-8128)
[»] scaffold0019 (1 HSPs)
scaffold0019 (6-62)||(18749-18806)
[»] scaffold0001 (1 HSPs)
scaffold0001 (135-200)||(138123-138188)
[»] scaffold1849 (1 HSPs)
scaffold1849 (9-62)||(72-126)
[»] scaffold0069 (1 HSPs)
scaffold0069 (146-200)||(48-102)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 6 - 339
Target Start/End: Original strand, 24442661 - 24442997
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggttt-ggaga 104  Q
    ||||||||||| ||||||||| |||||||||||||||  ||| || ||||||||||| | ||||||||  || |||||||||||||| |||||| |||||    
T  24442661 tctcgatcacaacaaagcaaaaagcagagcctctactcttcctcatgaacggtgctcctctggttcccggtgttagccaagcgatcaaaggtttgggaga 24442760  T
Q  105 actagggtttctcaaaaacatgtaacc-atgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggat 203  Q
    | |||||||| |  ||||| |||||||  |||||||| |||||||||||||||||||||||||||  |||| |  | ||||||| |||| |||||||| |    
T  24442761 attagggttt-ttgaaaacgtgtaacctttgacttcagcacaagggttctatttatagaactcctaatgtgctatggaagtcagaagtccctattgggct 24442859  T
Q  204 t--atgtaaacccaataactcattaag-cttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattttctcctttt 300  Q
    |  |||||| |||| ||||||||| || |||||||||||||||||| ||| ||| ||||||||||||||| ||||||| ||||||||| |||||||||||    
T  24442860 tacatgtaagcccattaactcatttagccttttgctaactaattagcgttattttctaaacgcacccatattataagtcttacttata-tttctcctttt 24442958  T
Q  301 gaccattctattgtgtctggccctataggttcttctcac 339  Q
    |||| |||| |||| | || |||||||||||||| ||||    
T  24442959 gaccgttcttttgtttgtgaccctataggttcttgtcac 24442997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 31189654 - 31189985
Alignment:
Q  1 aaaagtctcgatcaca--gcaaagcaaagagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtt 98  Q
    |||| |||||||||||  |||||||||| | ||||||||||||| |||||||||||| |||||| |    ||||   |||||||||||||||||||||||    
T  31189654 aaaaatctcgatcacaaagcaaagcaaatatcagagcctctactagtccacacgaacagtgctcctccaattcctggtgctagccaagcgatcagaggtt 31189753  T
Q  99 tggagaactagggtttctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactatt 198  Q
    |||| || ||||||||||  ||||| |||||||| ||||||| || |||||||||||||||||||||| |  |||| |  | ||||||  ||||||| ||    
T  31189754 tggacaattagggtttct--aaaacgtgtaaccaagacttcagcagaagggttctatttatagaactcttactgtgctttgcaagtcacaagtcactgtt 31189851  T
Q  199 gggattatgtaaacccaataactcattaag-cttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattttctcct 297  Q
    |||  |  |||| | || ||||   || ||  ||||||||||||||||| ||| |||||||||||||||||| |||||||| |||||| || ||||| ||    
T  31189852 gggcctccgtaatctcattaacgagtttagtattttgctaactaattagcgttatttgctaaacgcacccatcatataagtcttacttgta-tttct-ct 31189949  T
Q  298 tttgaccattctattgtgtctggccctataggttct 333  Q
    || |||| |||| |||||| || ||| |||||||||    
T  31189950 ttagaccgttcttttgtgtgtgaccccataggttct 31189985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 333
Target Start/End: Original strand, 10666445 - 10666678
Alignment:
Q  102 agaactagggtttctcaaaaacatgtaaccatg-acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgg 200  Q
    |||| ||||||||||||||||| ||||||||   |||||| ||| ||||||||||||||||||||||| ||||| || | ||||||| |||||||||| |    
T  10666445 agaagtagggtttctcaaaaacgtgtaaccaaacacttcagcactagggttctatttatagaactcctagtgtgctctgcaagtcagaagtcactattag 10666544  T
Q  201 gattatgtaaacccaataactcattaag--cttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattttctcctt 298  Q
    | ||   ||| |||||||||   || ||   || |||||||||||||| ||| ||| ||||||||| || | ||||||||  ||||||||| || | |||    
T  10666545 gcttcattaagcccaataacgagtttagtaattctgctaactaattagcgttatttactaaacgcatcccttatataagtcatacttatatatttttctt 10666644  T
Q  299 ttgaccattctattgtgtctggccctataggttct 333  Q
    |||||  |||| |||||| || |||||||||||||    
T  10666645 ttgactgttct-ttgtgtgtgaccctataggttct 10666678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 108 - 333
Target Start/End: Original strand, 19392817 - 19393041
Alignment:
Q  108 agggtttctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatg 207  Q
    |||||||||||||||| |||||| | || |||| ||||||||||||||||||||||| ||| ||||| ||   ||||||| ||||||| ||||| ||  |    
T  19392817 agggtttctcaaaaacgtgtaacaaagaattcatcacaagggttctatttatagaacacctagtgtgctctacaagtcagaagtcactgttgggcttccg 19392916  T
Q  208 taaacccaataactcattaag-cttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattttctccttttgaccat 306  Q
    | | || ||||||   || ||  |||||||||| |||||| ||| ||  ||||| |||||| | ||||||||  |||||||| ||||| ||||||| | |    
T  19392917 tcagcctaataacgagtttagtattttgctaaccaattagcgttattcactaaatgcacccgttatataagtcatacttata-tttct-cttttgatcgt 19393014  T
Q  307 tctattgtgtctggccctataggttct 333  Q
    ||| |||||| || |||||||||||||    
T  19393015 tcttttgtgtgtgaccctataggttct 19393041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 18258539 - 18258605
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattggg 201  Q
    |||||| ||| ||||||||||||||||||||||||||||| || | ||||||| |||||||||||||    
T  18258539 acttcagcactagggttctatttatagaactccttgtgtgctctgcaagtcagaagtcactattggg 18258605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 333
Target Start/End: Original strand, 41680383 - 41680582
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttt 232  Q
    |||||||||| ||||||||||||||||||||||||||||| || | ||||||| |  |||||||||  ||   ||| |||||||||   || ||   ||     
T  41680383 acttcaacactagggttctatttatagaactccttgtgtgctctgcaagtcagaaaccactattggacttcattaagcccaataacgtgtttagtaattc 41680482  T
Q  233 tgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggtt 331  Q
    |||||||||||||| ||| ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  || | |||||| || |||||||||||    
T  41680483 tgctaactaattagcgttatttactaaacgcaccctttatataagtcatacttatatatttct-cttttgactgtt-ttttgtgtgtgaccctataggtt 41680580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 289
Target Start/End: Complemental strand, 34129445 - 34129305
Alignment:
Q  150 ttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttgctaactaattagt 247  Q
    ||||||||||||||||||||||||| || | ||||||| || |||||||||| ||  |||| ||||||||||  || ||   || |||||||||||||      
T  34129445 ttctatttatagaactccttgtgtgctctgcaagtcagaagccactattgggcttcagtaagcccaataacttgtttagtaattatgctaactaattaac 34129346  T
Q  248 gttgtttgctaaacgcacccataatataagtgttacttatat 289  Q
    ||| ||| |||||||||||| | ||||||||  |||||||||    
T  34129345 gttatttactaaacgcaccc-ttatataagtcatacttatat 34129305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 333
Target Start/End: Complemental strand, 19231836 - 19231576
Alignment:
Q  76 tgctagccaagcgatcagaggtttg-gagaactagggtttctcaaaaacatgtaaccatga--cttcaacacaagggttctatttatagaactccttgtg 172  Q
    |||||||||||  |||||| ||||  |||| |||||||||||| ||||| |||||| || |  ||| | ||| |||||||||||||||||||||||||||    
T  19231836 tgctagccaaggaatcagaagtttcagagagctagggtttctccaaaacgtgtaac-atcaaactttagcactagggttctatttatagaactccttgtg 19231738  T
Q  173 tgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttgctaactaattagtgttgtttgctaaacgcacccata 270  Q
    || || | ||||||| || |||||||||  ||   ||| ||||||| |   || ||   || |||||||| ||||| ||| ||| |||||||||||| |     
T  19231737 tgctctgtaagtcagaagccactattggatttcattaagcccaatatcgagtttagtaattctgctaactgattagcgttatttactaaacgcacccctt 19231638  T
Q  271 atataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||||||||||||    
T  19231637 atataagtcatacttatatatttct-cttttgactgttct-ttgtgtgtgaccctataggttct 19231576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 291
Target Start/End: Original strand, 18256990 - 18257140
Alignment:
Q  142 cacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag-cttttgctaact 240  Q
    ||||| |||||||||| |||||||||| ||||  || | ||||||| || |||||||| | ||  |||| || ||||||   || || ||||||||||||    
T  18256990 cacaatggttctatttctagaactcctagtgttctctgcaagtcagaagccactattgagttttcgtaagccaaataacaagtttagtcttttgctaact 18257089  T
Q  241 aattagtgttgtttgctaaacgcacccataatataagtgttacttatattt 291  Q
    |||||  ||| ||| ||||| |||||||| |||||||| ||| ||||||||    
T  18257090 aattaacgttatttactaaatgcacccatcatataagtcttagttatattt 18257140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 15730771 - 15730714
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  15730771 tctcgatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 15730714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 28131449 - 28131364
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataac 220  Q
    |||||| ||| |||||||||||||||||||| || | ||| |||| ||||||  ||||||||||||| ||  |||| |||||||||    
T  28131449 acttcagcactagggttctatttatagaacttctagcgtgctcagcaagtcaaaagtcactattgggcttcagtaaccccaataac 28131364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 48807801 - 48807858
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  48807801 tctcgatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 48807858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 8465886 - 8465847
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtg 174  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  8465886 acttcagcactagggttctatttatagaactccttgtgtg 8465847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 333
Target Start/End: Original strand, 47166286 - 47166473
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttgctaactaat 243  Q
    |||||||||||||||||||||||  |||| || | ||||||| || |||||||||| ||  |||| |||||||||   || ||   || |||||||||||    
T  47166286 agggttctatttatagaactcctcatgtgctctgcaagtcagaagccactattgggtttcagtaagcccaataacgtgtttagtaattctgctaactaat 47166385  T
Q  244 tagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    ||| ||| ||| |||||| ||||| | ||||||||  ||||||||| ||||| |||||||   |||| |||||| || |||||||||||||    
T  47166386 tagcgttatttactaaacacaccc-ttatataagtcatacttatatatttct-cttttgattgttct-ttgtgtgtgaccctataggttct 47166473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 334
Target Start/End: Original strand, 15168848 - 15168909
Alignment:
Q  272 tataagtgttacttatattttctccttttgaccattctattgtgtctggccctataggttctt 334  Q
    ||||||| |||||||||||| ||| |||||||| ||||||||||| || ||||||||| ||||    
T  15168848 tataagtcttacttatattt-ctctttttgaccgttctattgtgtgtgaccctataggctctt 15168909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 18562031 - 18561993
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgt 173  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  18562031 acttcaacacaagggttctatttatagaattacttgtgt 18561993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 19389422 - 19389377
Alignment:
Q  142 cacaagggttctatttatagaactccttgtgtgttcagaaagtcag 187  Q
    |||||||||||||||||||||||| ||| |||| |||| |||||||    
T  19389422 cacaagggttctatttatagaactacttatgtgctcagcaagtcag 19389377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 10 - 334
Target Start/End: Complemental strand, 19374355 - 19374033
Alignment:
Q  10 gatcacagcaaagcaaagagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtttgg-agaacta 108  Q
    ||||||||||||| ||| | ||||||||||||| ||||||||||||||||||| | | ||||||  ||| |||||||||||||||||||||| |||| ||    
T  19374355 gatcacagcaaagaaaaaa-cagagcctctactcgtccacacgaacggtgctcctctagttcccggtgcaagccaagcgatcagaggtttgggagaatta 19374257  T
Q  109 gggtttctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgt 208  Q
    |||||||| |||  | ||||||| |||||||| ||||||||||||||||||||||||||| | |||||| | ||||||| | ||||||||||  ||  ||    
T  19374256 gggtttctgaaa--cgtgtaaccttgacttcagcacaagggttctatttatagaactcctagcgtgttctgcaagtcagaaatcactattggtcttccgt 19374159  T
Q  209 aaacccaataactcattaag-cttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattttctccttttgaccatt 307  Q
    || |||| |||| |||| || ||| |||||||||||||||| | ||||||||||||||||||| ||||||| ||| ||||| ||||||||||||||  ||    
T  19374158 aagcccattaacgcatttagccttctgctaactaattagtgatatttgctaaacgcacccatattataagtcttatttata-tttctccttttgactgtt 19374060  T
Q  308 ctattgtgtctggccctataggttctt 334  Q
    || |||||| || |||||||| |||||    
T  19374059 cttttgtgtatgaccctatagattctt 19374033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 28 - 334
Target Start/End: Complemental strand, 9538953 - 9538646
Alignment:
Q  28 agcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtttg-gagaa-ctagggtttctcaaaaacat 125  Q
    |||| |||||||||| ||||||||||| ||||||| | ||||||| | ||||||||||||||||| | |||   ||||  ||||||||| | |||||| |    
T  9538953 agcaaagcctctactcgtccacacgaatggtgctcctctggttcctagtgctagccaagcgatcatatgttcaagagattctagggttttt-aaaaactt 9538855  T
Q  126 gtaaccat-gacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcat 224  Q
    ||||||   ||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||  |||| ||   |||| |||    
T  9538854 gtaacctccgacttcagcacaagggttctatttatagaacttcttgtgtgttctgaaagtcagcagtcactactgggcttccgtaagcctgttaacccat 9538755  T
Q  225 taagcttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattttctccttttgaccattctattgtgtctggccct 324  Q
    | | ||||||||||| ||||| |||| ||| ||||||||||||||||||||||| ||||||||| || |||||||||| | ||||||||||| || ||||    
T  9538754 ttaacttttgctaaccaattaatgttattttctaaacgcacccataatataagtcttacttata-ttcctccttttgatcgttctattgtgtgtgaccct 9538656  T
Q  325 ataggttctt 334  Q
    ||| ||||||    
T  9538655 atatgttctt 9538646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 6 - 314
Target Start/End: Complemental strand, 32637499 - 32637191
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtttggagaa 105  Q
    ||||||||||| ||||||||| || ||||||| |||| |||||  |||||||||||| | |||||  | |||||||||||||||||||||||||||  ||    
T  32637499 tctcgatcacaacaaagcaaaaagtagagcctttactcgtccatgcgaacggtgctcctctggttttcgatgctagccaagcgatcagaggtttgggaaa 32637400  T
Q  106 ctagggtttctcaaaaacatgtaacc-atgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggatt 204  Q
     ||||||||||  |||||||| ||||  |||||||| |||||||||| ||||||||||||||||  | || || | ||||||| ||||||||||||  ||    
T  32637399 atagggtttct-gaaaacatgcaacctttgacttcagcacaagggttatatttatagaactcctaatatgctctgcaagtcagaagtcactattggactt 32637301  T
Q  205 atgtaaacccaataactcatt-aagcttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattttctccttttgac 303  Q
      |||| |||| || | |||| || ||| ||||||||||||||  || |||||||| |||||||||| ||| ||| ||||||||| ||||||||||||||    
T  32637300 ccgtaagcccattagcgcattcaaccttctgctaactaattagcattatttgctaagcgcacccatattattagtcttacttata-tttctccttttgac 32637202  T
Q  304 cattctattgt 314  Q
    | |||| ||||    
T  32637201 cgttcttttgt 32637191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 76 - 333
Target Start/End: Complemental strand, 11421930 - 11421675
Alignment:
Q  76 tgctagccaagcgatcagaggtttgg-agaactagggtttctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtg 174  Q
    ||||||||||||||| |||||||||| |||| ||||||||||  |||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||    
T  11421930 tgctagccaagcgattagaggtttgggagaattagggtttct--aaaacatgtaaccaagacttcagcacgagggttctatttatagaactcctagtgtg 11421833  T
Q  175 ttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag-cttttgctaactaattagtgttgtttgctaaacgcacccataata 273  Q
     || | ||||||| |||  |||||||| ||  |||| ||||||| |   || || |||||| ||||||||||| ||| ||| |||||||||||||| |||    
T  11421832 ctctgcaagtcagaagtatctattgggcttccgtaagcccaatagcgagtttagtcttttgttaactaattagcgttcttttctaaacgcacccatcata 11421733  T
Q  274 taagtgttacttatattttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    ||||| ||||||||| ||||| ||||||||| |||| |||||| || ||| |||||||||    
T  11421732 taagtcttacttata-tttct-cttttgacctttcttttgtgtgtgaccccataggttct 11421675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 76 - 291
Target Start/End: Complemental strand, 19363353 - 19363138
Alignment:
Q  76 tgctagccaagcgatcagaggtttg-gagaactagggtttctcaaaaacatgtaacca-tgacttcaacacaagggttctatttatagaactccttgtgt 173  Q
    |||||| |||||||||||||||||| ||||| ||||| || | |||| | || ||||  |||||||| |||||||||| |||||||||||||||  ||||    
T  19363353 tgctagtcaagcgatcagaggtttgagagaattagggattttgaaaa-cgtgcaacctctgacttcagcacaagggttttatttatagaactccaagtgt 19363255  T
Q  174 gttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaagcttttgctaactaattagtgttgtttgctaaacgcacccataata 273  Q
    ||||   | ||||| | ||||||||||| || ||||| |||| |||||  |||| |||||||||||| ||||||||| |||||||||||||||||||||     
T  19363254 gttctacacgtcagaattcactattgggcttctgtaagcccattaacttgttaa-cttttgctaactgattagtgttatttgctaaacgcacccataatg 19363156  T
Q  274 taagtgttacttatattt 291  Q
     |||| ||||||||||||    
T  19363155 caagtcttacttatattt 19363138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 30039886 - 30039981
Alignment:
Q  102 agaactagggtttctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactat 197  Q
    |||||||||||||||||||||| |||||| | ||||||| ||| ||||||||||||||| ||||||| ||||| || | ||||||  |||||||||    
T  30039886 agaactagggtttctcaaaaacgtgtaacaaagacttcagcactagggttctatttatataactcctagtgtgctctgcaagtcaaaagtcactat 30039981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 135 - 333
Target Start/End: Complemental strand, 34976439 - 34976240
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaagc--ttt 232  Q
    |||||| ||| ||||||||||||||||||||||||||||| |  | ||||||| || |||||||||  ||   ||| |||||||||   || ||   ||     
T  34976439 acttcagcactagggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtaattc 34976340  T
Q  233 tgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggtt 331  Q
    |||||||||||||||||| ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||||||||||    
T  34976339 tgctaactaattagtgttatttactaaacgcaccccttatataagtcatacttatatatttct-cttttgacggttct-ttgtgtgtgaccctataggtt 34976242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 333
Target Start/End: Complemental strand, 4546950 - 4546751
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttt 232  Q
    |||||| ||| |||||||||||||||||||||||| |||| || | ||||||| ||||||||||||| ||  |||| |||||||||   || ||   ||     
T  4546950 acttcagcactagggttctatttatagaactccttatgtgctctgcaagtcagaagtcactattgggcttcagtaagcccaataacgtgtttagtaattc 4546851  T
Q  233 tgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggtt 331  Q
    |  ||||||||||| ||| ||| ||||||||||||   ||||||||  ||||||||| ||||| ||||||||  |||| |||||| ||||| ||||||||    
T  4546850 ttataactaattagcgttatttactaaacgcaccccctatataagtcatacttatatatttct-cttttgactgttct-ttgtgtgtggccttataggtt 4546753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 333
Target Start/End: Original strand, 28917201 - 28917389
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaagc--ttttgctaactaat 243  Q
    ||||||||||||||||||||||||||||| |  | ||||||| || |||||||||  ||   ||| |||| ||||   || ||   ||||||||||||||    
T  28917201 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccagtaacgagtttagtagttttgctaactaat 28917300  T
Q  244 tagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    ||| ||| ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||||||||||||    
T  28917301 tagcgttatttactaaacgcaccccttatataagtcgtacttatatatttct-cttttgactgttct-ttgtgtgtgaccctataggttct 28917389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 9488433 - 9488348
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataac 220  Q
    |||||| ||| |||||| |||||||||||||| ||||||| || | ||||||| ||||||||||||| ||  |||| |||||||||    
T  9488433 acttcagcactagggttatatttatagaactctttgtgtgctctgcaagtcagaagtcactattgggcttcagtaagcccaataac 9488348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 331
Target Start/End: Complemental strand, 15462388 - 15462191
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttt 232  Q
    |||||| ||| ||||||||||||||||||||||||||||| |  | ||||||| || |||||||||  ||   ||| |||||||||   || ||   |||    
T  15462388 acttcagcactagggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtaattt 15462289  T
Q  233 tgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattttctccttttgaccattctattgtgtctggccctataggtt 331  Q
    ||||||||| ||||  || ||| |||||||||||| | ||||||||  ||||||||| ||   ||||||||  |||| |||||| || |||||||||||    
T  15462288 tgctaactagttagctttatttactaaacgcaccccttatataagtcgtacttatatatttgtcttttgactgttct-ttgtgtgtgaccctataggtt 15462191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 1942476 - 1942378
Alignment:
Q  233 tgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggtt 331  Q
    |||||||||||||| ||||||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||||||||||    
T  1942476 tgctaactaattagcgttgtttactaaacgcaccc-ttatataagtcatacttatatatttct-cttttgactgttct-ttgtgtgtgaccctataggtt 1942380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 4675233 - 4675290
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  4675233 tctcgatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 4675290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 5871434 - 5871377
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  5871434 tctcgatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 5871377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 10725215 - 10725303
Alignment:
Q  28 agcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtt--tggagaactagggttt 114  Q
    ||||| ||||||||| |||||||||||| |  ||| | ||||||||  | |||||||||||||||||||||  | ||||||||||||||    
T  10725215 agcagtgcctctactcgtccacacgaacagctctcctctggttcccggtactagccaagcgatcagaggttcatagagaactagggttt 10725303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 10938984 - 10939072
Alignment:
Q  28 agcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtt--tggagaactagggttt 114  Q
    ||||| ||||||||| |||||||||||| |  ||| | ||||||||  | |||||||||||||||||||||  | ||||||||||||||    
T  10938984 agcagtgcctctactcgtccacacgaacagctctcctctggttcccggtactagccaagcgatcagaggttcatagagaactagggttt 10939072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 18164180 - 18164123
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  18164180 tctcgatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 18164123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 20244955 - 20244898
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  20244955 tctcgatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 20244898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 21161389 - 21161481
Alignment:
Q  4 agtctcgatcacagcaaagcaaa-gagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagag 95  Q
    ||||| ||||||||||||||||| ||||| |||||||||| ||||||||||| ||| ||| |   |||||   | ||||||||||||||||||    
T  21161389 agtcttgatcacagcaaagcaaaagagcaaagcctctacttgtccacacgaatggttctcctccagttcctggtactagccaagcgatcagag 21161481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 3356207 - 3356260
Alignment:
Q  10 gatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  3356207 gatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 3356260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 5524175 - 5524239
Alignment:
Q  107 tagggtttctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtg 172  Q
    |||||||||||||||   ||||||  ||||||||||||||  ||||||||||||||||| ||||||    
T  5524175 tagggtttctcaaaatg-tgtaactctgacttcaacacaaaagttctatttatagaactacttgtg 5524239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 35224553 - 35224504
Alignment:
Q  137 ttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtca 186  Q
    |||| |||||||||||||||||||||||  |||||||| ||| |||||||    
T  35224553 ttcagcacaagggttctatttatagaaccacttgtgtgctcataaagtca 35224504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 5617126 - 5617082
Alignment:
Q  290 tttctccttttgaccattctattgtgtctggccctataggttctt 334  Q
    ||||||||||||||| ||||||||||| || || |||||||||||    
T  5617126 tttctccttttgaccgttctattgtgtgtgaccttataggttctt 5617082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 333
Target Start/End: Original strand, 11483317 - 11483419
Alignment:
Q  230 ttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctatag 328  Q
    ||||||||||||||||| ||| ||| ||||||||| || | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||| |||    
T  11483317 ttttgctaactaattagcgttatttactaaacgcatcccttatataagtcgtacttatatatttct-cttttgactgttct-ttgtgtgtgaccctttag 11483414  T
Q  329 gttct 333  Q
    |||||    
T  11483415 gttct 11483419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 334
Target Start/End: Complemental strand, 26817318 - 26816979
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtttgg-aga 104  Q
    ||||||| ||||||||||||| |  |||||||||||| |||||||||||| |||||| | |||||||| ||||||||||||||||||||||||||| ||     
T  26817318 tctcgattacagcaaagcaaaaactagagcctctactcgtccacacgaacagtgctcctctggttcccgatgctagccaagcgatcagaggtttgggagg 26817219  T
Q  105 actagggtttct--------ca-aaaacatgtaacca-tgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcac 194  Q
    |  ||| ||| |        || ||||| |||||||  |||||||||||||||||||||||| |||||||||||||||||||| | ||||||| |  ||     
T  26817218 atgaggtttttttttttctccagaaaacgtgtaacctctgacttcaacacaagggttctattgatagaactccttgtgtgttctgtaagtcagaaaacat 26817119  T
Q  195 tattgggattatgtaaacccaataactcattaagcttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattttct 294  Q
    ||||||||||  |||| |||| |||| |||| ||| |||||||||| ||||  ||| ||||||||||||||||||  ||||||| |||||||||||||||    
T  26817118 tattgggattccgtaagcccattaacacatttagcatttgctaactgattaacgttatttgctaaacgcacccatcttataagtcttacttatattttct 26817019  T
Q  295 ccttttgaccattctattgtgtctggccctataggttctt 334  Q
    |||||||| | |||||||| || || ||||||| ||||||    
T  26817018 ccttttgaacgttctattgcgtgtgaccctataagttctt 26816979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 168
Target Start/End: Complemental strand, 15538526 - 15538363
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggttt-ggaga 104  Q
    ||||||||||||||||||||| || |||||||||| | ||||| | ||||||| ||||| ||||||||  ||||||||||||||| |||||||| |||||    
T  15538526 tctcgatcacagcaaagcaaaaagtagagcctctattcgtccatatgaacggttctcatatggttcccgttgctagccaagcgattagaggtttaggaga 15538427  T
Q  105 actagggtttctcaaaaacatgtaacc-atgacttcaacacaagggttctatttatagaactcct 168  Q
    | ||||||||||  ||||  |||||||  |||||||| |||||||||||| |||||| |||||||    
T  15538426 attagggtttct-gaaaatgtgtaacctttgacttcagcacaagggttctgtttataaaactcct 15538363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 4471835 - 4471739
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtttgga 102  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||||| || ||||||| | ||||| |   |||||||||| ||||||||||||||||    
T  4471835 tctcgatcacaacaaagcaaaaagcagagcctctactagtccacacaaatggtgctcctctggtttctggtgctagccaatcgatcagaggtttgga 4471739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 333
Target Start/End: Original strand, 25978153 - 25978341
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttgctaactaat 243  Q
    ||||||||||||||||||||||||||||| || | ||||||| |||||| |||||| ||  |||| |||||||||   || ||   || || ||||||||    
T  25978153 agggttctatttatagaactccttgtgtgctctgcaagtcagaagtcacaattgggtttcagtaagcccaataacgtgtttagtaattctgataactaat 25978252  T
Q  244 tagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    ||| ||||||| |||||||||||| | ||||||||  ||||||||| ||||| |||| |||  |||| |||||| || |||||||||||||    
T  25978253 tagcgttgtttactaaacgcaccccttatataagtcatacttatatatttct-ctttagactgttct-ttgtgtgtgaccctataggttct 25978341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 291
Target Start/End: Complemental strand, 14147948 - 14147748
Alignment:
Q  92 agaggtttgg-agaactagggtttctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcag 190  Q
    |||||||||| |||| |||||||| | ||||||||| ||||||||||||| |||||||||| ||||||||||| ||||  |||| ||   ||||||| ||    
T  14147948 agaggtttgggagaattagggttttt-aaaaacatgcaaccatgacttcagcacaagggttgtatttatagaaatcctattgtgctctacaagtcagaag 14147850  T
Q  191 tcactattgggattatgtaaacccaataactcattaag-cttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat 289  Q
    ||||||||| | ||  |||| |||| ||| || || ||  ||||||||||||||||  ||  ||||||||| | || ||| ||||| || ||||||||||    
T  14147849 tcactattgagcttccgtaagcccattaaatcgtttagtgttttgctaactaattaacgtgatttgctaaatgtacgcatcatatatgtcttacttatat 14147750  T
Q  290 tt 291  Q
    ||    
T  14147749 tt 14147748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 333
Target Start/End: Complemental strand, 21399742 - 21399480
Alignment:
Q  76 tgctagccaagcgatcagaggtttg-gagaactagggtttctcaaaaacatgtaaccatga-cttcaacacaagggttctatttatagaactccttgtgt 173  Q
    |||||||||||  |||||| ||||  |||| |||||||||||  |||||  |||||| | | ||||| ||| ||||||||||||||||||||||||||||    
T  21399742 tgctagccaaggaatcagaagtttcagagagctagggtttcttcaaaacgcgtaaccttaaacttcagcactagggttctatttatagaactccttgtgt 21399643  T
Q  174 gttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttgctaactaattagtgttgtttgctaaacgcacccataa 271  Q
    | |  | ||||||| || |||||||||  ||   ||| |||||||||   || ||   ||||||||||||||||| ||| ||| |||||| ||||| | |    
T  21399642 gctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtaattttgctaactaattagcgttatttactaaacacacccctta 21399543  T
Q  272 tataagtgttacttatat---tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    |||||||  |||||||||   ||||| ||||||||  |||| |||||| || |||||||||||||    
T  21399542 tataagtcgtacttatatatatttct-cttttgactgttct-ttgtgtgtgaccctataggttct 21399480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 333
Target Start/End: Original strand, 15316593 - 15316789
Alignment:
Q  137 ttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttg 234  Q
    |||| ||| ||||||||||||||||||||||||||||  || | || |||| || |||||||||| ||  |||| ||||||||||  || ||   || ||    
T  15316593 ttcagcactagggttctatttatagaactccttgtgttctctgcaattcagaagccactattgggcttcagtaagcccaataacttgtttagtaattctg 15316692  T
Q  235 ctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    |||||||||||  ||| ||| ||||| |||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||||||||||||    
T  15316693 ctaactaattaacgttatttactaaatgcaccc-ttatataagtcatacttatatatttct-cttttgactgttct-ttgtgtgtgaccctataggttct 15316789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 333
Target Start/End: Original strand, 15845951 - 15846150
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttt 232  Q
    |||||| ||| |||||||| |||||||||||||||||||| |  | ||||||| || |||||||||  ||   ||| |||||||||   || ||   |||    
T  15845951 acttcagcactagggttctctttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtaattt 15846050  T
Q  233 tgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggtt 331  Q
    ||||||||||||||  || ||| |||||||||||| | |||||||   ||||||||| ||||| ||||||||  |||| |||||| || |||||||||||    
T  15846051 tgctaactaattagctttatttactaaacgcaccccttatataaggtgtacttatatatttct-cttttgactgttct-ttgtgtgtgaccctataggtt 15846148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 12300928 - 12300871
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  12300928 tctcgatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 12300871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 12332229 - 12332172
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  12332229 tctcgatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 12332172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 13517806 - 13517763
Alignment:
Q  136 cttcaacacaagggttctatttatagaactccttgtgtgttcag 179  Q
    |||||||||||||||||||||||||||| | |||||||| ||||    
T  13517806 cttcaacacaagggttctatttatagaaatacttgtgtggtcag 13517763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 333
Target Start/End: Complemental strand, 21035026 - 21034926
Alignment:
Q  232 ttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggt 330  Q
    |||||||||||||||  || ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || ||||||||||    
T  21035026 ttgctaactaattagctttatttactaaacgcaccccttatataagtcgtacttatatatttct-cttttgactgttct-ttgtgtgtgaccctataggt 21034929  T
Q  331 tct 333  Q
    |||    
T  21034928 tct 21034926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 28089061 - 28088936
Alignment:
Q  76 tgctagccaagcgatcagaggtttg-gagaactagggtttctcaaaaacatgtaaccatga-cttcaacacaagggttctatttatagaactccttgtgt 173  Q
    |||||||||||  |||||| ||||  |||| ||||||||||| |||||| || ||||   | ||||| ||| | ||||||||||||||||||| |||| |    
T  28089061 tgctagccaaggaatcagaagtttcagagagctagggtttctaaaaaacgtgcaacctcaaacttcagcactatggttctatttatagaactcgttgttt 28088962  T
Q  174 gttcagaaagtcagcagtcactattg 199  Q
    |||| | ||||||| || ||||||||    
T  28088961 gttctgcaagtcagaagccactattg 28088936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 334
Target Start/End: Complemental strand, 15538325 - 15538223
Alignment:
Q  233 tgctaactaattagtgttgtttgctaaacgcacccataatataagtgt--tacttatattttctccttttgaccattctattgtgtctggccctataggt 330  Q
    ||||||||| |||  ||| ||||||||||||| || || |||||| ||  ||||||||||| |||||||||| | |||| |||||| || |||||||| |    
T  15538325 tgctaactagttaacgttatttgctaaacgcatccgtattataagagtcttacttatattt-ctccttttgatcgttcttttgtgtgtgaccctatagtt 15538227  T
Q  331 tctt 334  Q
    ||||    
T  15538226 tctt 15538223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 131 - 316
Target Start/End: Original strand, 20099716 - 20099901
Alignment:
Q  131 catgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaagct 230  Q
    |||| ||||| ||||||||| ||||||  |||||||||| |||||||||||||| ||||||||||||| || ||  |||| |||||||||||||| | ||    
T  20099716 catgtcttcagcacaagggtcctatttggagaactccttctgtgttcagaaagttagcagtcactattaggctttcgtaagcccaataactcattcaact 20099815  T
Q  231 tttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattttctccttttgaccattctattgtgt 316  Q
    |||||||||||||||||||| ||||||||| | | ||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  20099816 tttgctaactaattagtgttatttgctaaatgtatccataatataagtcttacttatattttctccttttgaccattcttttgtgt 20099901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 101 - 264
Target Start/End: Complemental strand, 5098567 - 5098404
Alignment:
Q  101 gagaactagggtttctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgg 200  Q
    ||||||||||||||||||||||| |||||| | ||||||| ||| ||| ||||||||||||||||||| ||||| || | ||||||| ||||||||||||    
T  5098567 gagaactagggtttctcaaaaacgtgtaacaaagacttcagcactagg-ttctatttatagaactcctagtgtgctctgcaagtcagaagtcactattgg 5098469  T
Q  201 gattatgtaaacccaataac-tcattaagcttttgctaactaattagtgttgtttgctaaacgca 264  Q
      ||  |||| |||||||||    ||||  ||||||||||||||||||||| ||| |||||||||    
T  5098468 acttcagtaagcccaataacgagtttaatattttgctaactaattagtgttatttactaaacgca 5098404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 39428361 - 39428260
Alignment:
Q  101 gagaactagggtttctc-aaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattg 199  Q
    ||||||||||||||||| |||||  | |||||| ||||||| ||| |||||||||||||||||||||||||||||||| | ||||||| |||||||||||    
T  39428361 gagaactagggtttctccaaaaatgtataaccaagacttcagcaccagggttctatttatagaactccttgtgtgttctgcaagtcagaagtcactattg 39428262  T
Q  200 gg 201  Q
    ||    
T  39428261 gg 39428260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 107 - 333
Target Start/End: Complemental strand, 39536096 - 39535873
Alignment:
Q  107 tagggtttctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattat 206  Q
    |||||||||| |||||| ||||||  |||||||| ||||||||||||||||||||||||||  ||||| |  | |||||||   ||| ||||||| ||      
T  39536096 tagggtttctaaaaaacgtgtaactctgacttcagcacaagggttctatttatagaactccaagtgtgctatgcaagtcagatttcagtattgggcttcc 39535997  T
Q  207 gtaaacccaataactcattaag-cttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattttctccttttgacca 305  Q
     ||| |||||||||   || || ||||||||||||||||  |||| ||| |||||||||||||| ||||||||  |||||||| ||||| |||||||| |    
T  39535996 ataagcccaataacgagtttagtcttttgctaactaatt-ttgttatttactaaacgcacccatcatataagtcatacttata-tttct-cttttgacta 39535900  T
Q  306 ttctattgtgtctggccctataggttct 333  Q
    ||| ||||||| || ||| |||||||||    
T  39535899 ttc-attgtgtgtgaccccataggttct 39535873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 333
Target Start/End: Original strand, 12764416 - 12764603
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttgctaactaat 243  Q
    ||||||||||||||||||||||||||||| || | ||||||| || |||||||||| ||  |||| ||||||||||  || ||   || |||||||||||    
T  12764416 agggttctatttatagaactccttgtgtgctctgcaagtcagaagccactattgggcttcagtaatcccaataacttgtttagtaattctgctaactaat 12764515  T
Q  244 tagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    ||  ||| ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||||||||||||    
T  12764516 taacgttatttactaaacgcaccc-ttatataagtcatacttatatatttct-cttttgactgttct-ttgtgtgtgaccctataggttct 12764603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 20084433 - 20084533
Alignment:
Q  36 ctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtt-tg-gagaactagggtttctcaaaaacatgtaaccat 133  Q
    ||||||| ||||||||||||||||||| | | ||||||  |||||||||| |||| ||||||| || ||||| ||||||||||||||||| |||||||||    
T  20084433 ctctactagtccacacgaacggtgctcctctagttcccggtgctagccaaacgataagaggttatgagagaattagggtttctcaaaaacgtgtaaccat 20084532  T
Q  134 g 134  Q
    |    
T  20084533 g 20084533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 333
Target Start/End: Original strand, 9811159 - 9811346
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttgctaactaat 243  Q
    ||||||||||||||||||||||||||||| || | ||||||| || |||||||||| ||  |||| ||||||||||  || ||   || |||||||||||    
T  9811159 agggttctatttatagaactccttgtgtgctctgcaagtcagaagccactattgggcttcagtaagcccaataacttgtttagtaattctgctaactaat 9811258  T
Q  244 tagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    ||  ||| ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  || | |||||| || |||||||||||||    
T  9811259 taacgttatttactaaacgcaccc-ttatataagtcatacttatatatttct-cttttgactgttat-ttgtgtgtgaccctataggttct 9811346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 289
Target Start/End: Original strand, 12703400 - 12703544
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttgctaactaat 243  Q
    ||||||||||||||||||||||||||||| || | ||||||| || |||||||||| ||  |||| ||||||||||  || ||   || |||||||||||    
T  12703400 agggttctatttatagaactccttgtgtgctctgcaagtcagaagccactattgggcttcagtaagcccaataacttgtttagtaattctgctaactaat 12703499  T
Q  244 tagtgttgtttgctaaacgcacccataatataagtgttacttatat 289  Q
    ||  ||| ||| |||||||||||| | ||||||||  |||||||||    
T  12703500 taacgttatttactaaacgcaccc-ttatataagtcatacttatat 12703544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 28719001 - 28719066
Alignment:
Q  33 agcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtt 98  Q
    ||||| |||| ||||||||||||||| ||| | | |||||||||||||||||||||||||||||||    
T  28719001 agcctttactcgtccacacgaacggttctcctctagttcccaatgctagccaagcgatcagaggtt 28719066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 28719091 - 28719159
Alignment:
Q  107 tagggtttctc-aaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtg 174  Q
    ||||||||||| |||||| ||||||  | ||||||||||||| ||||||||||||||||| ||||||||    
T  28719091 tagggtttctccaaaaacttgtaactctaacttcaacacaagagttctatttatagaactacttgtgtg 28719159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 333
Target Start/End: Complemental strand, 20941902 - 20941715
Alignment:
Q  147 gggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaagc--ttttgctaactaatt 244  Q
    ||||| |||||||||||||||||||||| |  | ||||||| || |||||||||  ||   ||| |||||||||   || ||   |||||||||||||||    
T  20941902 gggttatatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcattaagcccaataacgagtttagtaattttgctaactaatt 20941803  T
Q  245 agtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    ||  || ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||||||||||||    
T  20941802 agctttatttactaaacgcaccccttatataagtcgtacttatatatttct-cttttgactgttct-ttgtgtgtgaccctataggttct 20941715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 333
Target Start/End: Complemental strand, 31097703 - 31097504
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaagc--ttt 232  Q
    |||||| ||| |||||||||||||||||||| ||||||||||  | ||||||| || | |||||||  ||   ||| |||||||||   ||  |   |||    
T  31097703 acttcagcactagggttctatttatagaacttcttgtgtgttatgcaagtcagaagccgctattggacttcactaagcccaataacgagtttcgtaattt 31097604  T
Q  233 tgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggtt 331  Q
    |||||||||||||  ||| ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||||||||||    
T  31097603 tgctaactaattaacgttatttactaaacgcaccccttatataagtcgtacttatatatttct-cttttgactgttct-ttgtgtgtgaccctataggtt 31097506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 24932590 - 24932647
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  24932590 tctcgatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 24932647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 333
Target Start/End: Complemental strand, 22942041 - 22941939
Alignment:
Q  230 ttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctatag 328  Q
    |||||||||||||||||  || ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || ||||||||    
T  22942041 ttttgctaactaattagctttatttactaaacgcaccccttatataagtcgtacttatatatttct-cttttgactgttct-ttgtgtgtgaccctatag 22941944  T
Q  329 gttct 333  Q
    |||||    
T  22941943 gttct 22941939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 333
Target Start/End: Complemental strand, 26245892 - 26245791
Alignment:
Q  230 ttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctatag 328  Q
    ||||||||||||||| | ||| ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||| |||| |||||||||  |||||||    
T  26245892 ttttgctaactaatt-gcgttatttactaaacgcaccccttatataagtcatacttatatatttct-cttttgaccgttct-ttgtgtctgatcctatag 26245796  T
Q  329 gttct 333  Q
    |||||    
T  26245795 gttct 26245791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 12788949 - 12789004
Alignment:
Q  8 tcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  12788949 tcgatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 12789004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 25804811 - 25804865
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgg 200  Q
    ||||||||||||||||||||||||||||| |  | ||||||| || |||||||||    
T  25804811 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattgg 25804865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 7864862 - 7864890
Alignment:
Q  146 agggttctatttatagaactccttgtgtg 174  Q
    |||||||||||||||||||||||||||||    
T  7864862 agggttctatttatagaactccttgtgtg 7864890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 31651078 - 31651142
Alignment:
Q  34 gcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtt 98  Q
    ||||||||| |||||||||||| |  ||| | |||||||| ||||| ||||||| ||||||||||    
T  31651078 gcctctactcgtccacacgaacagatctcctctggttcccgatgctcgccaagcaatcagaggtt 31651142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 261
Target Start/End: Complemental strand, 37444175 - 37443927
Alignment:
Q  6 tctcgatcacagcaaagcaaa--gagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtttggag 103  Q
    ||||||||||| ||||| |||  ||||| |||||||||| ||||||||||||||||||| | |||||||| |||||||||||||| ||||||            
T  37444175 tctcgatcacaacaaagtaaaaagagcaaagcctctactcgtccacacgaacggtgctcctttggttcccgatgctagccaagcgttcagag-------- 37444084  T
Q  104 aactagggtttctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggat 203  Q
    || |||||||||| |||||| |||||||| ||||||| ||||||||||| ||||||||||||||| ||||| || | ||||| | ||||| ||||||| |    
T  37444083 aattagggtttct-aaaaacgtgtaaccaagacttcagcacaagggttcaatttatagaactcctagtgtgctctgcaagtcggaagtcattattgggct 37443985  T
Q  204 tatgtaaacccaataactcattaagcttttgctaactaattagtgttgtttgctaaac 261  Q
    |  |||| |||| ||||   |||  |||||||||||||||||| ||| ||||||||||    
T  37443984 tccgtaagcccattaacgatttagtcttttgctaactaattagcgttatttgctaaac 37443927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 15341332 - 15341612
Alignment:
Q  10 gatcacagcaaagcaaagagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtttg-gagaacta 108  Q
    |||| |||||||| ||| |  |||||||||||| ||||||||||||||||||| | |||||||| ||||||||||| |||||||||||||| ||||| ||    
T  15341332 gatcgcagcaaagaaaaaattagagcctctactcgtccacacgaacggtgctcctttggttcccgatgctagccaaacgatcagaggtttgagagaatta 15341431  T
Q  109 gggtttctcaaaaacatgt--aacc-atgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggatta 205  Q
    ||||||||    || ||||  ||||  | |||||| || ||||||||||||||||||| |||| |||||||| | ||||||| | | | ||||||| |      
T  15341432 gggtttct---gaatatgtacaaccttttacttcagcataagggttctatttatagaattcctagtgtgttctgcaagtcagaaattaatattgggctac 15341528  T
Q  206 tgtaaacccaataactcattaag-cttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttata 288  Q
     |||| |||| |||| |||| || | | |||||||||||||| ||| | |||||||| |||||||  ||||||| |||||||||    
T  15341529 cgtaaccccattaacgcatttagccctctgctaactaattagcgttatctgctaaacacacccatcttataagtcttacttata 15341612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 119 - 291
Target Start/End: Original strand, 24763072 - 24763245
Alignment:
Q  119 aaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaata 218  Q
    ||||| |||||| | ||||||| ||| ||||||||||||||||||||||| ||||| |  | ||||||  |||||||||| || ||  |||| |||||||    
T  24763072 aaaacgtgtaacaaagacttcagcaccagggttctatttatagaactcctagtgtgctttgcaagtcaaaagtcactattaggctttcgtaagcccaata 24763171  T
Q  219 actcattaag-cttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattt 291  Q
    ||   || || |||||||||||||||||| ||| ||| |||||  ||||||| |||||||| ||||||||||||    
T  24763172 acgagtttagtcttttgctaactaattagcgttatttactaaatacacccatcatataagtcttacttatattt 24763245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 230 - 339
Target Start/End: Complemental strand, 29801262 - 29801154
Alignment:
Q  230 ttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattttctccttttgaccattctattgtgtctggccctatagg 329  Q
    ||||||||| ||||||||||| |||| |||||||||||||  ||||||| ||||||||| ||||||||||||||| ||||||||||| ||  | ||||||    
T  29801262 ttttgctaaataattagtgttatttgttaaacgcacccatcttataagtcttacttata-tttctccttttgaccgttctattgtgtgtgatcatatagg 29801164  T
Q  330 ttcttctcac 339  Q
    ||||| ||||    
T  29801163 ttcttgtcac 29801154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 291
Target Start/End: Complemental strand, 19617354 - 19617162
Alignment:
Q  101 gagaactagggtttctcaaaaaca-tgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattg 199  Q
    |||||||| ||||||||||||||  ||||||  |||||||| |||||| ||||||||||||||||| |  |||||||  | |||||||   |||||||||    
T  19617354 gagaactaaggtttctcaaaaaccgtgtaactctgacttcagcacaagtgttctatttatagaacttcaagtgtgttatgcaagtcagatttcactattg 19617255  T
Q  200 ggattatgtaaacccaataactcattaag-cttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattt 291  Q
    || ||  |||| |||||||||   || || |||||||||||||||||| ||| ||| ||||||| || ||| ||||||||  |||||||||||    
T  19617254 ggctttcgtaagcccaataacgagtttagtcttttgctaactaattagcgttatttactaaacgtacacatcatataagtcatacttatattt 19617162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 24228600 - 24228694
Alignment:
Q  107 tagggtttctcaaaaacatgtaaccatga-cttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgg 200  Q
    |||||||||| |||||| |||||||   | ||||| ||| ||||||||||||||||||||||||||||| || | ||||||  || |||||||||    
T  24228600 tagggtttctaaaaaacgtgtaacctcaaacttcagcactagggttctatttatagaactccttgtgtgctctgcaagtcaaaagccactattgg 24228694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 334
Target Start/End: Original strand, 20686933 - 20687037
Alignment:
Q  230 ttttgctaactaattagtgttgtttgctaaacgcacccataat-ataagtgttacttatattttctccttttgaccattctattgtgtctggccctatag 328  Q
    ||||| |||||||| |  ||| ||||||||||||||||  | | |||||| |||||||||||| |||||||||||| ||||||||||| || ||| |||     
T  20686933 ttttgttaactaataaacgttatttgctaaacgcaccccaagttataagtcttacttatattt-ctccttttgaccgttctattgtgtgtgacccaatat 20687031  T
Q  329 gttctt 334  Q
    ||||||    
T  20687032 gttctt 20687037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 32739376 - 32739476
Alignment:
Q  101 gagaactagggtttctcaaaaacatgtaacc-atgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattg 199  Q
    ||||||||||||||||||||| | ||||||| |  |||||| ||| |||||||||||| |||||||||| ||||| |  | ||||||  |||||||||||    
T  32739376 gagaactagggtttctcaaaa-cgtgtaacctaaaacttcagcactagggttctatttgtagaactcctagtgtgctatgcaagtcaaaagtcactattg 32739474  T
Q  200 gg 201  Q
    ||    
T  32739475 gg 32739476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 76 - 331
Target Start/End: Complemental strand, 27483 - 27232
Alignment:
Q  76 tgctagccaagcgatcagaggtttg-gagaactagggtttctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtg 174  Q
    ||||||||||||||||||||||||| ||||| |||||||||   ||||| |||||| |  |||||| |||||||||||||||||||||| | || |||||    
T  27483 tgctagccaagcgatcagaggtttgagagaattagggtttc---aaaacgtgtaacaaatacttcagcacaagggttctatttatagaaattctagtgtg 27387  T
Q  175 ttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag-cttttgctaactaattagtgttgtttgctaaacgcacccataata 273  Q
     || | ||||||| ||||||||||||| ||  |||| || ||||||   || || ||||||| ||||||||||  |||||| |||||| ||||||| |||    
T  27386 ctctgcaagtcag-agtcactattgggcttccgtaagccgaataacgagtttagtcttttgcaaactaattagcattgtttactaaacacacccatcata 27288  T
Q  274 taagtgttacttatattttctccttttgaccattctattgtgtctggccctataggtt 331  Q
    ||||| ||| ||||| ||||| |||||||||||||| |||||| || ||| |||||||    
T  27287 taagtcttaattata-tttct-cttttgaccattcttttgtgtgtgaccccataggtt 27232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 19734543 - 19734818
Alignment:
Q  16 agcaaagcaaagagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggttt-ggagaactagggttt 114  Q
    ||||||||||| | ||||||||||||| |||||  |||||||| ||| |    |||||  |||||||| ||||||||||||||| |||||| ||||||||    
T  19734543 agcaaagcaaacaacagagcctctactagtccaagcgaacggttctcctccaattcccggtgctagcctagcgatcagaggtttaggagaattagggttt 19734642  T
Q  115 ctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaaccc 214  Q
    || |||  |  ||| ||| ||||||||||||||||||||||| ||||||||||| ||| | ||   |||| || ||| | ||||||| ||  |||| |||    
T  19734643 ctaaaatgc--gtagccaagacttcaacacaagggttctattcatagaactcctagtgagctctccaagtaagaagtaattattgggcttccgtaagccc 19734740  T
Q  215 aataactcattaag-cttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattt 291  Q
    | ||||   || || ||||||||||||||||| |||| |||||||||||||||||| |||||| | ||||||||||||    
T  19734741 attaacgagtttagtcttttgctaactaattaatgttatttgctaaacgcacccatcatataactcttacttatattt 19734818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 333
Target Start/End: Complemental strand, 19219408 - 19219210
Alignment:
Q  133 tgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag-ctt 231  Q
    |||||||| ||||||||||||||||||||||||||  |||||||| | ||||||| | | ||||||||  ||  |||| |||| |||||| || || |||    
T  19219408 tgacttcagcacaagggttctatttatagaactccaagtgtgttctgcaagtcagaatttactattggactttcgtaagcccattaactcgtttagtctt 19219309  T
Q  232 ttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattttctccttttgaccattctattgtgtctggccctataggtt 331  Q
    || |||||||||||| ||| ||||||||||||||||||  |||||||   ||||||| ||| ||||||||||||||||||| ||| ||  ||||||||||    
T  19219308 ttactaactaattagcgttatttgctaaacgcacccat--tataagtccaacttata-tttatccttttgaccattctattatgtgtgatcctataggtt 19219212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 10358567 - 10358669
Alignment:
Q  232 ttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattttctccttttgaccattctattgtgtctggccctataggtt 331  Q
    ||||||||| ||||||||| ||||||||| ||||||||  ||||||| ||||||||||||  ||||||||||| ||||||||||  || |||||||||||    
T  10358567 ttgctaactgattagtgttatttgctaaaggcacccatcttataagtcttacttatatttcttccttttgaccgttctattgtgcatgaccctataggtt 10358666  T
Q  332 ctt 334  Q
    |||    
T  10358667 ctt 10358669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 21996820 - 21996674
Alignment:
Q  16 agcaaagcaaagagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggttt-ggagaactagggttt 114  Q
    ||||||||||| | |||||||||||||  |||||| ||||||||||| | | ||| ||  ||||||||||||||| |||| ||| || ||| ||||||||    
T  21996820 agcaaagcaaacaacagagcctctactaatccacatgaacggtgctcctctagtttccggtgctagccaagcgattagagatttgggggaattagggttt 21996721  T
Q  115 ctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaa 163  Q
    ||  ||||  |||||| | |||||||||||||| |||||||||||||||    
T  21996720 ct--aaaaggtgtaacaaagacttcaacacaagtgttctatttatagaa 21996674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 291
Target Start/End: Original strand, 19735031 - 19735093
Alignment:
Q  229 cttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattt 291  Q
    ||||||||||||||||| |||| |||||||||||||||||| |||||| | ||||||||||||    
T  19735031 cttttgctaactaattaatgttatttgctaaacgcacccatcatataactcttacttatattt 19735093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 22559486 - 22559595
Alignment:
Q  8 tcgatcacagcaaagcaaagagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggttt-ggagaac 106  Q
    ||||||||| ||||  ||| ||||||||||||||| ||||||||||||||||||| |  | ||||| |||| | ||||| ||||| |||||| ||||||     
T  22559486 tcgatcacaacaaaagaaaaagcagagcctctactagtccacacgaacggtgctcctcagattcccgatgccaaccaagagatcaaaggtttgggagaat 22559585  T
Q  107 tagggtttct 116  Q
    ||||||||||    
T  22559586 tagggtttct 22559595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 21995749 - 21995687
Alignment:
Q  229 cttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattt 291  Q
    ||||||||||||||||||||||  || |||||||||||||| |||||||| ||| ||||||||    
T  21995749 cttttgctaactaattagtgttaatttctaaacgcacccatcatataagtcttatttatattt 21995687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 14075367 - 14075302
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgg 200  Q
    |||||| ||| |||||||||||||||||||||||||||||||| | ||||||| || |||| ||||    
T  14075367 acttcagcactagggttctatttatagaactccttgtgtgttctgcaagtcagaagccactgttgg 14075302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 1585390 - 1585447
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  1585390 tctcgatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 1585447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 10358458 - 10358525
Alignment:
Q  107 tagggtttctc-aaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtg 174  Q
    ||||||||||| |||||| ||||||  ||||||||||||||| ||||||||| ||||||| ||||||||    
T  10358458 tagggtttctccaaaaacgtgtaactttgacttcaacacaagagttctattt-tagaactacttgtgtg 10358525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 291
Target Start/End: Original strand, 18019259 - 18019402
Alignment:
Q  150 ttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaagc--ttttgctaactaattagt 247  Q
    ||||||||||||||||| ||||||| |  | ||||||| ||||||||||||  ||   ||| |||||||||   || ||   |||||||||||||||||     
T  18019259 ttctatttatagaactctttgtgtgctatgcaagtcagaagtcactattggacttcactaagcccaataacgagtttagtaattttgctaactaattagc 18019358  T
Q  248 gttgtttgctaaacgcacccataatataagtgttacttatattt 291  Q
    ||| ||| |||||||||||| | |||||| |  |||||||||||    
T  18019359 gttatttactaaacgcaccccttatataactcgtacttatattt 18019402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 33317741 - 33317618
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttgctaactaat 243  Q
    |||||||||||||||||||| |||||||| || | ||||||| || |||||| ||| ||  |||| |||||||||   || ||   || |||||||||||    
T  33317741 agggttctatttatagaacttcttgtgtgctctgcaagtcagaagccactatggggcttcagtaagcccaataacatgtttagtaattctgctaactaat 33317642  T
Q  244 tagtgttgtttgctaaacgcaccc 267  Q
    ||| ||| ||| ||||||||||||    
T  33317641 tagcgttatttactaaacgcaccc 33317618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 25536374 - 25536421
Alignment:
Q  136 cttcaacacaagggttctatttatagaactccttgtgtgttcagaaag 183  Q
    ||||||||||||||||||||||||||||   |||||||| ||||||||    
T  25536374 cttcaacacaagggttctatttatagaatcacttgtgtgatcagaaag 25536421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 8613789 - 8613761
Alignment:
Q  146 agggttctatttatagaactccttgtgtg 174  Q
    |||||||||||||||||||||||||||||    
T  8613789 agggttctatttatagaactccttgtgtg 8613761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 291
Target Start/End: Complemental strand, 18836360 - 18836075
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtttgg-aga 104  Q
    ||||||||||| ||||||||| ||||| ||||||||| |||||| |||||||||||| |    |||||  |||||||||||| ||||||||||||| |||    
T  18836360 tctcgatcacaacaaagcaaaaagcagcgcctctactagtccactcgaacggtgctcctacaattcccggtgctagccaagcaatcagaggtttgggaga 18836261  T
Q  105 actagggtttctcaaaaacatgtaacca-tgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggat 203  Q
    | ||  |||||| |||  | |||||||  |||||||| ||||||||||||||||||||||||||  |||||||| | |||| || | ||| ||||||| |    
T  18836260 attaaagtttctgaaa--cgtgtaacctctgacttcagcacaagggttctatttatagaactccaagtgtgttctgcaagttagaattcaatattgggct 18836163  T
Q  204 tatgtaaacccaataactca-ttaagcttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattt 291  Q
    |  |||| |||| ||||||| |||| |||||| |||||||| || |||  ||||| |||  |||||| |||||||  ||||||||||||    
T  18836162 tccgtaagcccattaactcatttaaccttttggtaactaatcagcgttacttgct-aacttacccatcatataagccttacttatattt 18836075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 135 - 333
Target Start/End: Complemental strand, 6431774 - 6431575
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttt 232  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||   ||||||| || |||||||||| ||  |||| |||||||||   || ||   ||     
T  6431774 acttcagcactagggttctatttatagaactccttgtgtgctcttcaagtcagaagccactattgggtttcagtaagcccaataacatgtttagtaattc 6431675  T
Q  233 tgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggtt 331  Q
    |||||||||||||  ||| ||| |||||||| ||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| ||||||||||||||    
T  6431674 tgctaactaattaacgttatttactaaacgctccccttatataagtaatacttatatatttct-cttttgactgttct-ttgtgtgtggccctataggtt 6431577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 289
Target Start/End: Original strand, 2962353 - 2962497
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttgctaactaat 243  Q
    |||||||||||||||||||||||| |||| ||   ||||||| || |||||||||| ||  |||| ||||||||||  || ||   || |||||||||||    
T  2962353 agggttctatttatagaactccttatgtgctcttcaagtcagaagccactattgggcttcagtaagcccaataacttgtttagtaattctgctaactaat 2962452  T
Q  244 tagtgttgtttgctaaacgcacccataatataagtgttacttatat 289  Q
    || |||| ||| |||||||||||| | ||||||||  |||||||||    
T  2962453 taatgttatttactaaacgcaccc-ttatataagtcatacttatat 2962497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 333
Target Start/End: Original strand, 8370668 - 8370867
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaagc--ttt 232  Q
    |||||| ||| |||||||||||||||||||||||||||||||  | ||||||| || || |||||   ||   ||| |||||||||   || ||   | |    
T  8370668 acttcagcactagggttctatttatagaactccttgtgtgttatgcaagtcagaagccattattgaacttcactaagcccaataacgagtttagtaatat 8370767  T
Q  233 tgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggtt 331  Q
    |||||||||||||| ||| ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||||||||||    
T  8370768 tgctaactaattagcgttatttactaaacgcaccccttatataagtcgtacttatatatttct-cttttgactgttct-ttgtgtgtgaccctataggtt 8370865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 8781294 - 8781343
Alignment:
Q  125 tgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtg 174  Q
    ||||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  8781294 tgtaaccctgacttcagcacaagggttctatttatagaactacttgtgtg 8781343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 333
Target Start/End: Complemental strand, 21970209 - 21970021
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttgctaactaat 243  Q
    ||||||||||||||||||||||||||||| |  | ||||||| || |||||||||  ||   ||| |||||||||   || ||   ||||||||||| ||    
T  21970209 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtagttttgctaactgat 21970110  T
Q  244 tagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    ||| ||| ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||| ||||||||    
T  21970109 tagcgttatttactaaacgcaccccttatataagtcgtacttatatatttct-cttttgactgttct-ttgtgtgtgaccctttaggttct 21970021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 37031553 - 37031644
Alignment:
Q  8 tcgatcacagcaaagcaa-agagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtt 98  Q
    ||||||||| |||||||| |||||| |||||||||| ||||||| ||||||| ||| | | |||||   ||||||||||||||||| |||||    
T  37031553 tcgatcacatcaaagcaatagagcaaagcctctactcgtccacaagaacggttctcctatagttcctggtgctagccaagcgatcataggtt 37031644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 26652717 - 26652771
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgg 200  Q
    ||||||||||||||||||||||||||||| || | ||||||| || |||||||||    
T  26652717 agggttctatttatagaactccttgtgtgctctgcaagtcagaagccactattgg 26652771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 26241915 - 26241850
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgg 200  Q
    |||||| ||| ||||||||||||||||||||||||||||| |  | ||||||| || |||||||||    
T  26241915 acttcagcactagggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattgg 26241850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 29561865 - 29561808
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  29561865 tctcgatcacagccaagcaaatagcagagcctctattgagtccacacgaacagtgctc 29561808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 45533557 - 45533614
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  45533557 tctcgatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 45533614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 22646775 - 22646716
Alignment:
Q  4 agtctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||||| ||||||| || |||||||||| || |||||||||||| ||||||    
T  22646775 agtctcgatcacagccaagcaaacagaagagcctctattgagtccacacgaacagtgctc 22646716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 333
Target Start/End: Original strand, 22659011 - 22659108
Alignment:
Q  235 ctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    |||||||||||| ||| ||| |||||||||||| | || |||||  ||||||||| ||||| ||||||||| |||| |||||| || |||||||||||||    
T  22659011 ctaactaattagcgttatttactaaacgcaccccttatttaagtcatacttatatatttct-cttttgaccgttct-ttgtgtgtgaccctataggttct 22659108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 25612067 - 25612017
Alignment:
Q  150 ttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgg 200  Q
    ||||||||||||||||||||||||| |  | ||||||| ||||||||||||    
T  25612067 ttctatttatagaactccttgtgtgctatgcaagtcagaagtcactattgg 25612017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 22658920 - 22658973
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattg 199  Q
    ||||||||||||||||||||||||||||| ||   ||||||| || ||||||||    
T  22658920 agggttctatttatagaactccttgtgtgctctacaagtcagaagccactattg 22658973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 76 - 333
Target Start/End: Original strand, 10240 - 10497
Alignment:
Q  76 tgctagccaagcgatcagaggtttg-gagaactagggtttctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtg 174  Q
    |||||||||||  |||||| ||||  |||||||||||||||| |||||  |||||| | ||||||| ||| ||||||||| ||||||||||||| |||||    
T  10240 tgctagccaaggaatcagaagtttcagagaactagggtttctaaaaaatgtgtaacaaagacttcagcactagggttctacttatagaactcctagtgtg 10339  T
Q  175 ttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag-cttttgctaactaattagtgttgtttgctaaacgcacccataata 273  Q
     |  | ||||||| ||||||||||||  ||  |||| | |||||||   || ||  ||||||||||||||||| ||| ||| ||| |||||||||| |||    
T  10340 ctttgcaagtcagaagtcactattggccttccgtaagcacaataacgagtttagtattttgctaactaattagcgttatttactatacgcacccattata 10439  T
Q  274 taagtgttacttatattttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    |||||  |||||||||||  | |||||||| ||||| |||||| || |||||||||||||    
T  10440 taagtcatacttatattt--ttcttttgactattcttttgtgtgtgaccctataggttct 10497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 108405 - 108743
Alignment:
Q  1 aaaagtctcgatcacagcaaagcaaagagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggttt- 99  Q
    ||||||| |||||| | ||||||||| |||| ||||||| || ||||||||| | ||||||||| ||||||||  |||||||||| |||  ||||||||     
T  108405 aaaagtcgcgatcaaaacaaagcaaaaagcaaagcctctgctcgtccacacggatggtgctcatctggttcccggtgctagccaaacgagaagaggtttt 108504  T
Q  100 -ggagaactagggtttctcaaaaacatgtaacca-tgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactat 197  Q
     ||| || |||||||||| |||  ||| |||||  |||||||| |||||||||||||||||||||||||||| ||||||  | ||||||| |     ||     
T  108505 gggataattagggtttctgaaa--catataacctctgacttcagcacaagggttctatttatagaactccttatgtgttatgtaagtcagaaaatgttac 108602  T
Q  198 tgggattatgtaaacccaataactcattaagcttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatattttctcct 297  Q
    |||| ||   ||| |||| |||| |||| | |||||||||||| ||||  ||| |||  ||| |||||||||  ||||| | |||||||||||| ||| |    
T  108603 tgggcttccataagcccattaacgcatttatcttttgctaactgattaacgttatttcttaagcgcacccatcttataa-tcttacttatatttcctcat 108701  T
Q  298 tttgaccattctattgtgtctggccctataggttcttctcac 339  Q
    ||||||| ||||||| ||| |  |||||||||||||| ||||    
T  108702 tttgaccgttctattatgtgtaaccctataggttcttttcac 108743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 54685 - 54585
Alignment:
Q  101 gagaactagggtttctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgg 200  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||| ||||| |  | ||||||| | ||||||||||    
T  54685 gagaactagggtttctcaaaaacgtgtaaccaagacttcaacactagggttctatttatagaaatcctagtgtgctttgcaagtcagaaatcactattgg 54586  T
Q  201 g 201  Q
    |    
T  54585 g 54585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 76 - 289
Target Start/End: Complemental strand, 636919 - 636702
Alignment:
Q  76 tgctagccaagcgatcagaggtttg-gagaactagggtttctcaaaaacatgtaaccatga-cttcaacacaagggttctatttatagaactccttgtgt 173  Q
    |||||||||||  |||||| ||||  ||||| ||||||||||||||||| ||||||||  | ||||| ||| | ||||||||||||||||||||| ||||    
T  636919 tgctagccaaggaatcagaagtttcagagaagtagggtttctcaaaaacgtgtaaccaaaaacttcagcactaaggttctatttatagaactcctagtgt 636820  T
Q  174 gttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttgctaactaattagtgttgtttgctaaacgcacccataa 271  Q
    | || | ||||||| |||||||||| || ||   ||| |||||||||   || ||   || |||||||||||||| ||| ||| |||||| ||||| | |    
T  636819 gctctgcaagtcagaagtcactattaggcttcattaagcccaataacgagtttagtaattctgctaactaattagcgttatttactaaacacacccctta 636720  T
Q  272 tataagtgttacttatat 289  Q
    |||||||  |||||||||    
T  636719 tataagtcatacttatat 636702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 9916012 - 9916100
Alignment:
Q  137 ttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtca-gcagtcactattgggattatgtaaacccaataactcatt 225  Q
    |||| ||||||||||||||| |||||||  |||||||| || | |||||| ||||||||||||| |||||||||| ||||||||| ||||    
T  9916012 ttcagcacaagggttctatt-atagaaccacttgtgtgctctgcaagtcaagcagtcactattgagattatgtaagcccaataacccatt 9916100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 333
Target Start/End: Complemental strand, 22613357 - 22613179
Alignment:
Q  156 ttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaagc--ttttgctaactaattagtgttgtt 253  Q
    ||||||||||||||||||| |  | ||||||| ||||||||||||  ||   ||| |||||||||   || ||   ||||||||||||||||| ||| ||    
T  22613357 ttatagaactccttgtgtgctatgcaagtcagaagtcactattggacttcactaagcccaataacgagtttagtaattttgctaactaattagcgttatt 22613258  T
Q  254 tgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    | |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||||||||||||    
T  22613257 tactaaacgcaccccttatataagtcgtacttatatatttct-cttttgactgttct-ttgtgtgtgaccctataggttct 22613179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 333
Target Start/End: Original strand, 43801782 - 43801979
Alignment:
Q  137 ttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttg 234  Q
    |||| ||| ||||||||||||||||||||||||||||| |  | ||||||| |||||||||||   || | ||| |||| ||||   || ||   |||||    
T  43801782 ttcagcactagggttctatttatagaactccttgtgtgctatgcaagtcagaagtcactattgtacttctctaagcccattaacgagtttagtatttttg 43801881  T
Q  235 ctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    ||||||||||||  || ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || ||| |||||||||    
T  43801882 ctaactaattagctttatttactaaacgcaccccttatataagtcgtacttatatatttct-cttttgactgttct-ttgtgtgtgacccaataggttct 43801979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 167
Target Start/End: Complemental strand, 8728679 - 8728516
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctcta-ctggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcagaggtttg-gag 103  Q
    ||||||||||||| ||||||  ||||||||||||| |  |||||||| |||||||||| | |   || |  |||||||||||  |||||| ||||  |||    
T  8728679 tctcgatcacagctaagcaagcagcagagcctctagcaagtccacacaaacggtgctcctctaaatctcggtgctagccaaggaatcagaagttttagag 8728580  T
Q  104 aactagggtttctcaaaaacatgtaaccatgacttcaacacaagggttctatttatagaactcc 167  Q
    || |||||||||| |||||| |||     |||||||||||||||||||||  ||||||||||||    
T  8728579 aattagggtttcttaaaaacgtgttggtctgacttcaacacaagggttctgcttatagaactcc 8728516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 333
Target Start/End: Original strand, 47666911 - 47667099
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttgctaactaat 243  Q
    ||||||||||||||||||||||||||||| |  | ||||||| || |||||||||  ||   ||| |||||||||   || ||   ||||||||||||||    
T  47666911 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtagttttgctaactaat 47667010  T
Q  244 tagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    ||| ||| ||| ||||||||| || | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||| ||||||||    
T  47667011 tagcgttatttactaaacgcatcccttatataagtcgtacttatatatttct-cttttgactgttct-ttgtgtgtgaccctttaggttct 47667099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 14482908 - 14482851
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  14482908 tctcgatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 14482851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 22240010 - 22240067
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  22240010 tctcgatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 22240067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 25662090 - 25662001
Alignment:
Q  137 ttcaacacaagggttctatttatagaactccttgtgtgttcagaaag-tcagcagtcactattgggattatgtaaacccaataactcatt 225  Q
    |||||||||||||||||||||||| |||  |||||||| || ||||| | |||||||| | ||| | ||||||||| |||||||| ||||    
T  25662090 ttcaacacaagggttctatttataaaaccacttgtgtgctctgaaagttaagcagtcattgttgagcttatgtaaatccaataacccatt 25662001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 28134138 - 28134203
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgg 200  Q
    |||||| ||| ||||||||||||||||||||||||||||| |  | ||||||| || |||||||||    
T  28134138 acttcagcactagggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattgg 28134203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 35936211 - 35936146
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgg 200  Q
    |||||| ||| | ||||||||||||||||||||||||||| |  | ||||||| ||||||||||||    
T  35936211 acttcagcactatggttctatttatagaactccttgtgtgctttgcaagtcagaagtcactattgg 35936146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 333
Target Start/End: Original strand, 19705951 - 19706053
Alignment:
Q  230 ttttgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctatag 328  Q
    |||||||||||||||||  || ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || ||||||||    
T  19705951 ttttgctaactaattagctttatttactaaacgcaccccttatataagtcgtacttatatatttct-cttttgactgttct-ttgtgtgtgaccctatag 19706048  T
Q  329 gttct 333  Q
    |||||    
T  19706049 gttct 19706053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 33283141 - 33283198
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| | ||||||||||| || |||||||||||| ||||||    
T  33283141 tctcgatcacagccaagcaaacaacagagcctctattgagtccacacgaacagtgctc 33283198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 333
Target Start/End: Complemental strand, 1059 - 871
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaagc--ttttgctaactaat 243  Q
    ||||||||||||||||||||||||||||| |  | ||||||| || |||||||||  ||   ||| |||||||||   || ||   ||||||||||||||    
T  1059 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtagttttgctaactaat 960  T
Q  244 tagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    ||| ||| ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||||||||||||    
T  959 tagcgttatttactaaacgcaccccttatataagtcgtacttatatatttct-cttttgactgttct-ttgtgtgtgaccctataggttct 871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 333
Target Start/End: Complemental strand, 128444 - 128184
Alignment:
Q  76 tgctagccaagcgatcagaggtttg-gagaactagggtttctcaaaaacatgtaaccatga-cttcaacacaagggttctatttatagaactccttgtgt 173  Q
    |||||||||||  |||||| ||||  |||| |||||||||||| || || |||||||   | ||||| ||| |||||||||||||||||| ||||| |||    
T  128444 tgctagccaaggaatcagaagtttcagagagctagggtttctccaagacgtgtaacctcaaacttcagcactagggttctatttatagaattccttatgt 128345  T
Q  174 gttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaagc--ttttgctaactaattagtgttgtttgctaaacgcacccataa 271  Q
    | || | |||| || ||||||||||||  ||   ||| |||||||||   || ||   ||||||||||||||||||||| ||| |||||| ||||| | |    
T  128344 gctctgcaagttagaagtcactattggacttcattaagcccaataacgagtttagtaattttgctaactaattagtgttatttactaaacacacccctta 128245  T
Q  272 tataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    |||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||||||||||||    
T  128244 tataagtcatacttatatatttct-cttttgactgttct-ttgtgtgtgaccctataggttct 128184  T

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Target: scaffold0031 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 165
Target Start/End: Original strand, 39281 - 39440
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactggtccacacgaacggtgctcatgtggttcccaatgctagccaagcgatcaga-ggtttggaga 104  Q
    ||||||||||| ||| ||||| || |||||||||||| |||||||||||| |||||| |    |||||  ||||||||||||||||||| |||| ||||     
T  39281 tctcgatcacaacaatgcaaacagtagagcctctactagtccacacgaacagtgctcctccaattcccggtgctagccaagcgatcagagggttgggagg 39380  T
Q  105 actagggtttctcaaaaacatgtaac-catgacttcaacacaagggttctatttatagaact 165  Q
    | |||||||| |  ||||| ||||||   ||| |||| ||||||||||||||| ||||||||    
T  39381 attagggttttt--aaaacgtgtaacatctgaattcagcacaagggttctattgatagaact 39440  T

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Target: scaffold0389 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 333
Target Start/End: Complemental strand, 1038 - 850
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaag--cttttgctaactaat 243  Q
    ||||||||||||||||||||||||||||| |  | ||||||| || |||||||||  ||   ||| |||||||||   || ||   ||||||||||| ||    
T  1038 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattggacttcactaagcccaataacgagtttagtagttttgctaactgat 939  T
Q  244 tagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggttct 333  Q
    ||| ||| ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||| ||||||||    
T  938 tagcgttatttactaaacgcaccccttatataagtcgtacttatatatttct-cttttgactgttct-ttgtgtgtgaccctttaggttct 850  T

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Target: scaffold0686 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 333
Target Start/End: Original strand, 7929 - 8128
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgggattatgtaaacccaataactcattaagc--ttt 232  Q
    |||||| ||| |||||||||||||||||||||||||| || |  | ||||||| || ||||||||   ||   ||| |||||||||    ||||   |||    
T  7929 acttcagcactagggttctatttatagaactccttgtatgctatgcaagtcagaagccactattgcacttcactaagcccaataacgagataagtaattt 8028  T
Q  233 tgctaactaattagtgttgtttgctaaacgcacccataatataagtgttacttatat-tttctccttttgaccattctattgtgtctggccctataggtt 331  Q
    ||||||||||||||  || ||| |||||||||||| | ||||||||  ||||||||| ||||| ||||||||  |||| |||||| || |||||||||||    
T  8029 tgctaactaattagctttatttactaaacgcaccccttatataagtcgtacttatatatttct-cttttgactgttct-ttgtgtgtgaccctataggtt 8126  T

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Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 18749 - 18806
Alignment:
Q  6 tctcgatcacagcaaagcaaagagcagagcctctactg-gtccacacgaacggtgctc 62  Q
    ||||||||||||| ||||||| ||||||||||||| || |||||||||||| ||||||    
T  18749 tctcgatcacagccaagcaaacagcagagcctctattgagtccacacgaacagtgctc 18806  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 138123 - 138188
Alignment:
Q  135 acttcaacacaagggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgg 200  Q
    |||||| ||| ||||||||||||||||||||||||||||| |  | ||||||| || |||||||||    
T  138123 acttcagcactagggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattgg 138188  T

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Target: scaffold1849 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1849
Description:

Target: scaffold1849; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 126 - 72
Alignment:
Q  9 cgatcacagcaaagcaaagagcagagcctcta-ctggtccacacgaacggtgctc 62  Q
    |||||||||| ||||||| ||||||||||||| | ||||||||||||| ||||||    
T  126 cgatcacagccaagcaaatagcagagcctctatcaggtccacacgaacagtgctc 72  T

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Target: scaffold0069 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 102 - 48
Alignment:
Q  146 agggttctatttatagaactccttgtgtgttcagaaagtcagcagtcactattgg 200  Q
    ||||||||||||||||||||||||||||| |  | ||||||| || |||||||||    
T  102 agggttctatttatagaactccttgtgtgctatgcaagtcagaagccactattgg 48  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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