View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_62 (Length: 333)
Name: NF21242_low_62
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 324
Target Start/End: Complemental strand, 24145292 - 24144983
Alignment:
| Q |
15 |
catagttcatcgagatgatccaaattcaaaaagagagttggaaggtgactttcagagaagaattctgcaagtgtttgccattcacgagaggcaattagtt |
114 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24145292 |
catagttcatcgagatgatccaaattcaaaaggagagttggaaggtgactttcagagaagaattctgcaagtgtttgccattcacgagaggcaattagtt |
24145193 |
T |
|
| Q |
115 |
aaaggaaatataccatatataaagtaaaaagatggtaagaaactagatgataaaataatgcatatgtgtcaagtagaagtggccaaacataagcagtgca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24145192 |
aaaggaaatataccatatataaagtaaaaagatggtaagaaactagatgataaaataatgcatatgtgtcaagtagaagtggccaaacataagcagtgca |
24145093 |
T |
|
| Q |
215 |
tggcatttatcttacacataaaaagtagtaacatattaactatcccctccgtttggtaacaataatgagtctccaattcatgaacctagcttgtgtcggt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24145092 |
tggcatttatcttacacataaaaagtagtaacatattaactatcccctccgtttggtaacaataatgagtctccaattcatgaacctagcttgtgtcggt |
24144993 |
T |
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| Q |
315 |
aaacctagta |
324 |
Q |
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|||||||||| |
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| T |
24144992 |
aaacctagta |
24144983 |
T |
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