View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_65 (Length: 327)
Name: NF21242_low_65
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_65 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 5855546 - 5855875
Alignment:
| Q |
1 |
gcagagacatccaagactcaagccaaacacaatagccattttatgaccttttggtttgcttggtgctacagaatctaggcaagcaaggatattgttatca |
100 |
Q |
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| T |
5855546 |
gcagagacatccaagactcaagccaaacacaatagccattttatgaccttttggtttgcttggtggtacagaatctaggcaagcaaagatattgttatca |
5855645 |
T |
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| Q |
101 |
gcattaaagcagtaacaatgaatgtaactacatgtgtctgtgacgtgccagtgttggacaccgtacgcaccttcaatatgaaatgtcggtgatgattaag |
200 |
Q |
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| T |
5855646 |
gcattaaagcagtaacaatgaatgtacctacatgtgtctgtgacgtgccggtgttggactccgtacacaccttcaatatgaaatgtcggtgatgattaag |
5855745 |
T |
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| Q |
201 |
cgtaattttgttttcaaaga---tattaccttgagtattggttaagttcatggatattggcatcaatgtcatcccatgacagtttggttcatttccagta |
297 |
Q |
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| T |
5855746 |
cataattttgttttcaaagatattattaccttgtgtattggttaagttcatggatattggcatcaatgtcatcccatgacagtttggttcatttccagta |
5855845 |
T |
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| Q |
298 |
gcacaaacaagaggattaccaacaatgctg |
327 |
Q |
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| T |
5855846 |
gcacaaacaagaggattaccaacaatgctg |
5855875 |
T |
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