View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_66 (Length: 322)
Name: NF21242_low_66
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 297
Target Start/End: Original strand, 27099756 - 27100029
Alignment:
| Q |
20 |
ctattcatggtctcaacaaacatgacacacaccgaacaaattacaaaggtttgtgtagcatgtattgacctacaaatccaaaaaataatagatccacatc |
119 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
27099756 |
ctattcatggtctcaacaaacatgacac----caaacaaattacaaaggtttgtgtagcatgtattgacctacaaatcctaaaaatcatagatccacatc |
27099851 |
T |
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| Q |
120 |
tacaaaactgtacattccttcaccccaaaaagttggctaactaaataaatcatcacattcggtgtgattaattcaataaatttcttgcttattaaattat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27099852 |
tacaaaactgtacattccttcaccccaaaaagttggctaactaaataaatcatcacattcggtgtgattaattcaataaatttcttgcttattaaattat |
27099951 |
T |
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| Q |
220 |
aattaggctcgatttttatcaacctaaagcgttttgtttcatcaatctaactattcaatacagtgttaacatgattga |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
27099952 |
aattaggctcgatttttatcaacctaaagcgttttgtttcatcaatctaattattcaatgcagtgttaacatgattga |
27100029 |
T |
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