View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21242_low_67 (Length: 320)
Name: NF21242_low_67
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_67 |
 | |
|
| [»] scaffold0229 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 61 - 294
Target Start/End: Complemental strand, 36933289 - 36933050
Alignment:
| Q |
61 |
atcacatgaaacaagcattggacacacactac-----tccagatatagatgatgactcaaa-atcaaaatcatgaactgaaacttcagatactataggat |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36933289 |
atcacatgaaacaagcattggacacacactacactactccatatatagatgatgactcaaagatcaaaatcatgaactgaaacttcagatactataggat |
36933190 |
T |
|
| Q |
155 |
agttgctaatcttttttagatgaaatatagttgataatcttgctcttagctgattgaattttgtagggtatggtaatactagcaaatataaagtgaaata |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36933189 |
agttgctaatcttttttagatgaaatatagttgataatcttgctcttagctgattgaattttgtagggtatggtaatactagcaaatataaagtgaaata |
36933090 |
T |
|
| Q |
255 |
agaacatgtttacaagtgtatttttcatatttctctaaaa |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36933089 |
agaacatgtttacaagtgtatttttcatatttctctaaaa |
36933050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 36933376 - 36933344
Alignment:
| Q |
15 |
aagacaaaatgatcatgagtaaagtttgtgtac |
47 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
36933376 |
aagacaaaatgatcatgagtaaaggttgtgtac |
36933344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 1029943 - 1029990
Alignment:
| Q |
86 |
acactactccagatatagatgatgactcaaa-atcaaaatcatgaact |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
1029943 |
acactactccagatatagatgatgactcaaagatcaaaatgatgaact |
1029990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 116
Target Start/End: Original strand, 20768 - 20798
Alignment:
| Q |
86 |
acactactccagatatagatgatgactcaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
20768 |
acactactccagatatagatgatgactcaaa |
20798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University