View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_low_7 (Length: 583)

Name: NF21242_low_7
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_low_7
NF21242_low_7
[»] chr6 (1 HSPs)
chr6 (13-564)||(34314174-34314723)


Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 564
Target Start/End: Complemental strand, 34314723 - 34314174
Alignment:
Q  13 aatatagacttatagagaagaataaagaagataaagaatgagactgcaattccaataaaatacaaagtcttgaataataatgacaacttgatacaagaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34314723 aatatagacttatagagaagaataaagaagataaagaatgagactgcaattccaataaaatacaaagtcttgaataataatgacaacttgatacaagaga 34314624  T
Q  113 gtagtatatat--tattaatttctannnnnnnnnnnaagaaatcaaaacggaatatattaaaaacaaagagactatttccttaacataaagtatgtaaga 210  Q
    |||||||||||  |||||||| |||           | |||||||||| | |||||||||| ||| ||||| ||||| ||||| |||||| |||||||||    
T  34314623 gtagtatatatattattaattcctattttttttt--acgaaatcaaaatgaaatatattaagaactaagagtctattcccttagcataaaatatgtaaga 34314526  T
Q  211 gaaaatagcagaaaagttacaatagagattcagacagaatgatcacaaattaactgattctcaaacatatttacaatatcaaccatcgtgaactctcaca 310  Q
    ||| ||||  |||||||||| ||||||||||| ||||||||||||||||||| |||||||  ||||||||||| ||||||||||||||||||||||||||    
T  34314525 gaagatagtcgaaaagttacgatagagattcatacagaatgatcacaaattagctgattccgaaacatatttataatatcaaccatcgtgaactctcaca 34314426  T
Q  311 aacaaattgttcacttgatataatactcctcttttgactattcaatttaaggaagtggtagtaaattaggtaatctgacatgaaaatgaaaggttagtta 410  Q
    |||||||||||| |||||||||| |||||||||||| ||||  ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  34314425 aacaaattgttcgcttgatataacactcctcttttggctatctaatttaaggaagtggt--taaattaggtaatctgacatgaaaatgaaaggttagtta 34314328  T
Q  411 ttgagactcttaaaaaatagggtgtcaaaatccgcaaaattgaagaagaatcacaccaaaattnnnnnnnttatgattacatttccaaacttttgaaaac 510  Q
    ||||||||||| ||||||||||||||||||||||||||| |||| || |||||||||||||||        ||| ||||||||||| |||||||||||||    
T  34314327 ttgagactcttcaaaaatagggtgtcaaaatccgcaaaactgaaaaaaaatcacaccaaaattaaaaaaactataattacatttccgaacttttgaaaac 34314228  T
Q  511 ttgtcaacataatagtgatgaataatttgagaaggatcaaaccaatctctagat 564  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34314227 ttgacaacataatagtgatgaataatttgagaaggatcaaaccaatctctagat 34314174  T

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