View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_72 (Length: 307)
Name: NF21242_low_72
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 43614712 - 43614430
Alignment:
| Q |
18 |
agaaactgtatatgaaatgaaattgactttgaaaactaataataataaattaataatttttcagtggcgacccaacaatgtacgaacgttattggcgaca |
117 |
Q |
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| T |
43614712 |
agaaactgtatatgaaatgaaattgactttgaaaactaataataataaattaataacttttcagtggcgacccaacaatgtacgaacgttattggcgaca |
43614613 |
T |
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| Q |
118 |
aatgggagacaagaccacaataataataccaggatggcaatctatgagttatttttctgatccaacaagcatttgttggtttcttgagccagaactttca |
217 |
Q |
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| T |
43614612 |
aatgggagacaagaccacaataataataccaggatggcaatctatgagttatttttctgatccaacaagcatttgttggtttcttgagccagaattttca |
43614513 |
T |
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| Q |
218 |
aaggaagtagtgaggttacataatgtggttggaaatgcagtaacacaaggtcgacacgttgttgttggaacaggttcatctca |
300 |
Q |
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| T |
43614512 |
aaggaagtagtgaggttacataatgtggttggaaatgcagtaacacaaggtcgacacgttgttgttggaacaggttcatctca |
43614430 |
T |
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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 300
Target Start/End: Complemental strand, 34688427 - 34688252
Alignment:
| Q |
125 |
gacaagaccacaataataataccaggatggcaatctatgagttatttttctgatccaacaagcatttgttggtttcttgagccagaactttcaaaggaag |
224 |
Q |
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| T |
34688427 |
gacaagagcacgatcataataccaggatggcaatccatgagctatttttcggatgtgtcgaacatatgttggtttcttgaggcagagtttgcaaaggagg |
34688328 |
T |
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| Q |
225 |
tagtgaggttacataatgtggttggaaatgcagtaacacaaggtcgacacgttgttgttggaacaggttcatctca |
300 |
Q |
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| T |
34688327 |
tagtgaggttgcacagagtggtcgggaatgcagtcacagaaggacgtcacattgttgtagggacaggttcctctca |
34688252 |
T |
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