View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_73 (Length: 305)
Name: NF21242_low_73
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_73 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 29731880 - 29731603
Alignment:
| Q |
17 |
gcaactgcattggctgcagcaatgatggtaccagtgactataattgccatcttcctattcttggtgttcattgttgttttggtaagtgaaattagggaga |
116 |
Q |
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| T |
29731880 |
gcaactgcattggctgcagcaatgatggtaccagtgactataattgccatcttcctattcttggtgttcattgttgttttggtaagtgaaattagggaga |
29731781 |
T |
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| Q |
117 |
gcaagaaacggaaacaagaaatgttcttggaaggaaaacacagaaaaataaagaacttgtgaaagctgagttgaggaatatgtatcatgaaaatcttata |
216 |
Q |
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| T |
29731780 |
gcaagaaacggaaacaagaaatgttcttggaaggaaaacacagaaaaataaagaacttgtgaaagctgagttgaggaatatgtatcatgaaaatcttata |
29731681 |
T |
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| Q |
217 |
ggctctttttataagactgagtttcccgcttatttgcaaaaataacggattctgttttcaaattattttatttttcat |
294 |
Q |
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| T |
29731680 |
ggctctttttataagactgagtttcccgcttatttgcaaaaatgacggattctgttttcaagttattttatttttcat |
29731603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 29741283 - 29741348
Alignment:
| Q |
229 |
aagactgagtttcccgcttatttgcaaaaataacggattctgttttcaaattattttatttttcat |
294 |
Q |
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| T |
29741283 |
aagactgagtttcccgcttatttgcaaaaataacggattctgttttcaagttattttatttttcat |
29741348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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