View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_75 (Length: 303)
Name: NF21242_low_75
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_75 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 517685 - 517383
Alignment:
| Q |
1 |
ctggaaattttgtcggttcaactttcaatggtggtccacaagtataagctgagttaagaactcccattattttccatcttgctggtgggaaaatagattt |
100 |
Q |
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| T |
517685 |
ctggaaattttgtcggttcaactttcaatggtggtccacaagtataagctgagttaagaactcccattattttccatcttgctggtgggaaaatagattt |
517586 |
T |
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| Q |
101 |
tttatccaaatcaggtggacatttaaaaacttgcatttgaaaaattgacttggattggcttggatccataagtattggtaaaagagttccatttctacaa |
200 |
Q |
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| T |
517585 |
tttatccaaatcaggtggacatttaaaaacttgcatttgaaaaattgacttggattggcttggatccataagtattggtaaaagagttccatttctacaa |
517486 |
T |
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| Q |
201 |
caaaatggtattttaccaatttcagtgtcattatatttttctggaggcaaatcacttattacaggannnnnnngacaattaattactttggagaaatcca |
300 |
Q |
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| T |
517485 |
caaaatggtattttaccaatttcagtgtcattatatttttctggaggcaaatcacttattacaggatttttttgacaattaattactttggagaaatcca |
517386 |
T |
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| Q |
301 |
tgt |
303 |
Q |
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| T |
517385 |
tgt |
517383 |
T |
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