View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_low_77 (Length: 301)

Name: NF21242_low_77
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_low_77
NF21242_low_77
[»] chr8 (3 HSPs)
chr8 (19-285)||(9692342-9692608)
chr8 (16-285)||(9675320-9675589)
chr8 (18-156)||(21463943-21464081)
[»] chr4 (3 HSPs)
chr4 (18-279)||(35162672-35162933)
chr4 (26-279)||(35155660-35155913)
chr4 (18-162)||(15556246-15556390)
[»] chr3 (26 HSPs)
chr3 (16-162)||(46236538-46236687)
chr3 (20-165)||(46480026-46480171)
chr3 (18-162)||(16025718-16025862)
chr3 (23-162)||(5156484-5156626)
chr3 (18-170)||(47397047-47397199)
chr3 (18-164)||(46544706-46544852)
chr3 (20-167)||(46498184-46498331)
chr3 (18-162)||(46526169-46526316)
chr3 (20-163)||(46539233-46539376)
chr3 (18-162)||(45883483-45883624)
chr3 (39-162)||(46548750-46548873)
chr3 (18-175)||(5160508-5160668)
chr3 (205-282)||(46236405-46236482)
chr3 (20-163)||(46484284-46484419)
chr3 (24-79)||(51944130-51944185)
chr3 (20-162)||(46474165-46474301)
chr3 (100-165)||(4581132-4581197)
chr3 (100-165)||(4613589-4613654)
chr3 (58-164)||(47413941-47414053)
chr3 (20-80)||(46532155-46532215)
chr3 (204-272)||(47413821-47413889)
chr3 (18-80)||(46554013-46554075)
chr3 (110-167)||(46491029-46491086)
chr3 (101-162)||(46532224-46532285)
chr3 (201-247)||(5156671-5156717)
chr3 (100-142)||(53390988-53391030)
[»] chr2 (3 HSPs)
chr2 (20-175)||(20144865-20145020)
chr2 (27-175)||(20168754-20168902)
chr2 (20-129)||(20359375-20359484)
[»] chr7 (5 HSPs)
chr7 (27-147)||(17708516-17708636)
chr7 (53-164)||(17699433-17699544)
chr7 (53-132)||(17736196-17736275)
chr7 (53-147)||(16722419-16722513)
chr7 (27-164)||(17718340-17718477)


Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 9692608 - 9692342
Alignment:
Q  19 gaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcac 118  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9692608 gaaggagttaggagtgagtttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcac 9692509  T
Q  119 aagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggccagtgttgcagtggtggccatgtgtatgccaactggaatagactttatagccg 218  Q
    |||||||||||||| |||||||||||||||||||||||||||  ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9692508 aagtctttcattgaagtaaacgaggaaggcactgaagctgctaaggccaatattgcagtggtggccatgtgtatgccaactggaatagactttatagccg 9692409  T
Q  219 atcacccttttctatttctaattagagaagattcgacccaaacgatcatctttgccggacaggttct 285  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9692408 atcaccctttcctatttctaattagagaagatttgacccaaacgatcatctttgccggacaggttct 9692342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 9675589 - 9675320
Alignment:
Q  16 gatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatattt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9675589 gatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatattt 9675490  T
Q  116 cacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggccagtgttgcagtggtggccatgtgtatgccaactggaatagactttatag 215  Q
    |||||||||  |||||| ||||| ||||||||||||||||||||| | |||| || |  | | | || | |||||  |||||||||||||||||||||||    
T  9675489 cacaagtctaccattgaagtaaatgaggaaggcactgaagctgctacagccaatgctaaaataggggtcttgtgtgcgccaactggaatagactttatag 9675390  T
Q  216 ccgatcacccttttctatttctaattagagaagattcgacccaaacgatcatctttgccggacaggttct 285  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9675389 ccgatcaccctttcctatttctaattagagaagattcgacccaaacaatcatctttgccggacaggttct 9675320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 21464081 - 21463943
Alignment:
Q  18 tgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttca 117  Q
    |||| |||||||| ||| ||||||||||||||   |||| |||||||||||||||||||||||     | |||| |||||| ||| ||||||||||||||    
T  21464081 tgaaagagctaggcgtggttttacctttctctgaaggagctttgacaaaaatggtggactctcgaattgctcaaaacctttatgtgtccaacatatttca 21463982  T
Q  118 caagtctttcattgatgtaaacgaggaaggcactgaagc 156  Q
    ||||||||| ||||| |||||||| ||||| || |||||    
T  21463981 caagtcttttattgaagtaaacgaagaaggtaccgaagc 21463943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 35162672 - 35162933
Alignment:
Q  18 tgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttca 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||  |||||||||||||||||    
T  35162672 tgaaggatctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactcacttgaaggtcaaaaccttttagtttccaacatatttca 35162771  T
Q  118 caagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggccagtgttgcagtggtggccatgtgtatgccaactggaatagactttatagcc 217  Q
    ||||||||||||||| ||||| ||| ||||||| | ||||||||| |||||   |||| |  |||||| |||||| ||||| ||| |||||||||||||     
T  35162772 caagtctttcattgaagtaaatgagaaaggcaccgtagctgctgcagccagctgtgcacttatggccaagtgtattccaaccggagtagactttatagct 35162871  T
Q  218 gatcacccttttctatttctaattagagaagattcgacccaaacgatcatctttgccggaca 279  Q
    ||||| |||||  ||||||||||||||||||||||||||||||| ||| ||||||| |||||    
T  35162872 gatcatcctttcttatttctaattagagaagattcgacccaaacaatcctctttgcgggaca 35162933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 279
Target Start/End: Original strand, 35155660 - 35155913
Alignment:
Q  26 ctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctt 125  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | || || |||  |||||||||||| |||| ||    
T  35155660 ctaggagtgattttacctttctcttctgggggtttgacaaaaatggtggactctcttgaaggtcaaaatctctccgttagcaacatatttcagaagtgtt 35155759  T
Q  126 tcattgatgtaaacgaggaaggcactgaagctgctgcggccagtgttgcagtggtggccatgtgtatgccaactggaatagactttatagccgatcaccc 225  Q
    | ||||| ||||||||  |||||||| |||||| ||| ||||||  | || |  |  || || |||   |||| ||| ||||||||||||| ||||||||    
T  35155760 ttattgaagtaaacgaaaaaggcactaaagctgttgcagccagtactacattatttaccttgggtagatcaaccggactagactttatagctgatcaccc 35155859  T
Q  226 ttttctatttctaattagagaagattcgacccaaacgatcatctttgccggaca 279  Q
    |||  ||||| ||||||||||||||| ||||||||| ||| |||||||||||||    
T  35155860 tttcttatttttaattagagaagatttgacccaaacaatcctctttgccggaca 35155913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 15556246 - 15556390
Alignment:
Q  18 tgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttca 117  Q
    ||||||| ||||||||| |||||||||||||| | ||||||||||| |||||||||||||| ||||  ||||||||||| | |||||| |||||||| ||    
T  15556246 tgaaggacctaggagtggttttacctttctctcccggaggtttgactaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattcca 15556345  T
Q  118 caagtctttcattgatgtaaacgaggaaggcactgaagctgctgc 162  Q
     |||||||||||  | |||||||| ||||||||||||||||||||    
T  15556346 aaagtctttcatccaagtaaacgaagaaggcactgaagctgctgc 15556390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 46236687 - 46236538
Alignment:
Q  16 gatgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtgga---ctctcttgaaggtcaagacctttctgtttccaacata 112  Q
    |||||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||||    ||| |||| ||| || |||| | |||||||||||||    
T  46236687 gatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaattgtggattcttcttttgagggtgaaaacctatatgtttccaacata 46236588  T
Q  113 tttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgc 162  Q
    |||||||| ||||||||||| ||||| || ||||||||||||| ||||||    
T  46236587 tttcacaaatctttcattgaagtaaatgaagaaggcactgaagttgctgc 46236538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 46480026 - 46480171
Alignment:
Q  20 aaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcaca 119  Q
    ||||||||||| ||| ||||||||||||||  ||||||| ||||||| |||||| |||||   |   ||||| |||||| ||||||||| ||||||||||    
T  46480026 aaggagctaggtgtggttttacctttctctggtggaggtctgacaaagatggtgaactcttcagttagtcaaaacctttgtgtttccaatatatttcaca 46480125  T
Q  120 agtctttcattgatgtaaacgaggaaggcactgaagctgctgcggc 165  Q
    ||||||||||||| ||||| || |||||||||||||||||||||||    
T  46480126 agtctttcattgaagtaaatgaagaaggcactgaagctgctgcggc 46480171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 16025718 - 16025862
Alignment:
Q  18 tgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttca 117  Q
    |||||||||| |||||  |||||||||||||| ||||||||||||||||||||||||||| |||||||  ||||||||| | ||||||   |||||||||    
T  16025718 tgaaggagcttggagtagttttacctttctctcctggaggtttgacaaaaatggtggactttcttgaacatcaagacctctttgtttctcgcatatttca 16025817  T
Q  118 caagtctttcattgatgtaaacgaggaaggcactgaagctgctgc 162  Q
    ||| |||||||| || ||||| || ||||| ||||||| ||||||    
T  16025818 caaatctttcatcgaagtaaatgaagaaggaactgaagttgctgc 16025862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 5156484 - 5156626
Alignment:
Q  23 gagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggact---ctcttgaaggtcaaga-cctttctgtttccaacatatttcac 118  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||||||||||||   ||||||  || ||| | |||||||||||| || |||||||||    
T  5156484 gagctaggagtgattttacctttcactcgtggaggtttgacaaaaatggtggactctcctcttg-tgggcaatagcctttctgtttctaaaatatttcac 5156582  T
Q  119 aagtctttcattgatgtaaacgaggaaggcactgaagctgctgc 162  Q
    || ||||||||||| ||||| || ||||||||||||||||||||    
T  5156583 aaatctttcattgaagtaaatgaagaaggcactgaagctgctgc 5156626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 47397199 - 47397047
Alignment:
Q  18 tgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttca 117  Q
    |||||||| ||||||||||||||||||||||    |||||||| ||||||||| |||||| ||| |  |||||| |||||| ||||||||||||||||||    
T  47397199 tgaaggagttaggagtgattttacctttctccctcggaggtttaacaaaaatgatggactttctagcgggtcaaaacctttttgtttccaacatatttca 47397100  T
Q  118 caagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggccagtg 170  Q
     |||| ||||||||| ||||| ||| |||||||| ||| |||| |||| ||||    
T  47397099 gaagtatttcattgaagtaaatgagaaaggcactaaagttgcttcggctagtg 47397047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 46544706 - 46544852
Alignment:
Q  18 tgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttca 117  Q
    ||||||||||||||||| |||||||||||||| | |||||||||||||| ||||||||||||| |   | |||| |||||  | ||||||||||||| ||    
T  46544706 tgaaggagctaggagtggttttacctttctctacaggaggtttgacaaatatggtggactctcctatggatcaaaaccttcatatttccaacatattcca 46544805  T
Q  118 caagtctttcattgatgtaaacgaggaaggcactgaagctgctgcgg 164  Q
    ||||||||| ||||| ||||| ||  | || ||||||||||||||||    
T  46544806 caagtcttttattgaagtaaatgaaaagggaactgaagctgctgcgg 46544852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 46498184 - 46498331
Alignment:
Q  20 aaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcaca 119  Q
    |||||||| || ||| |||| |||||| ||  |||||||||||| ||||||||| |||||  ||   ||||| |||||| ||||||||| ||||| ||||    
T  46498184 aaggagcttggcgtggttttgcctttcactaatggaggtttgactaaaatggtgaactctgctgtgagtcaaaacctttatgtttccaaaatattccaca 46498283  T
Q  120 agtctttcattgatgtaaacgaggaaggcactgaagctgctgcggcca 167  Q
    ||||||||||||| ||||| || ||||||||  |||||||||||||||    
T  46498284 agtctttcattgaagtaaatgaagaaggcaccaaagctgctgcggcca 46498331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 46526316 - 46526169
Alignment:
Q  18 tgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaag---gtcaagacctttctgtttccaacatatt 114  Q
    |||| ||| ||| |||||||||||||||||||| ||| ||||||||||| || ||||||||||   | |   ||||| ||||||  |||||||| |||||    
T  46526316 tgaaagagttagaagtgattttacctttctcttgtgggggtttgacaaatattgtggactctcaacacgcaagtcaaaacctttacgtttccaaaatatt 46526217  T
Q  115 tcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgc 162  Q
    |||||||||| ||||||| ||||| |||| |||||| |||||||||||    
T  46526216 tcacaagtctctcattgaagtaaatgagggaggcaccgaagctgctgc 46526169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 46539233 - 46539376
Alignment:
Q  20 aaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcaca 119  Q
    |||||||||||| || ||||||||||||||   |||||||||||||||||||||||||||| |  | ||||| |||||| ||||||| |  |||| ||||    
T  46539233 aaggagctaggaatggttttacctttctctcaaggaggtttgacaaaaatggtggactctcctacaagtcaaaacctttatgtttccgatgtattccaca 46539332  T
Q  120 agtctttcattgatgtaaacgaggaaggcactgaagctgctgcg 163  Q
    ||||||| ||||| ||||| ||  |||| ||  |||||||||||    
T  46539333 agtcttttattgaagtaaatgaacaaggaaccaaagctgctgcg 46539376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 45883624 - 45883483
Alignment:
Q  18 tgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttca 117  Q
    |||||||| |||||||| ||| ||||||||||  |||| ||||||||||||||||||||| ||    |  ||||||||||| | ||||  |||| |||||    
T  45883624 tgaaggagttaggagtggtttcacctttctctcgtggaagtttgacaaaaatggtggactatc---caaatcaagacctttatatttctcacatttttca 45883528  T
Q  118 caagtctttcattgatgtaaacgaggaaggcactgaagctgctgc 162  Q
    | ||||||||||||| || || || ||||||||||||||||||||    
T  45883527 ctagtctttcattgaagttaatgaagaaggcactgaagctgctgc 45883483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 46548873 - 46548750
Alignment:
Q  39 tacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaa 138  Q
    ||||||||| | |||| |||||||||||||||||| |||||| |   | | || |||||| |||||| || ||||||||||||||||||||||| |||||    
T  46548873 tacctttctatcctggtggtttgacaaaaatggtgaactctcctattgataaatacctttatgtttctaaaatatttcacaagtctttcattgaagtaaa 46548774  T
Q  139 cgaggaaggcactgaagctgctgc 162  Q
     || ||||| | ||||||||||||    
T  46548773 agaagaaggtaatgaagctgctgc 46548750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 5160508 - 5160668
Alignment:
Q  18 tgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggac---tctcttgaaggtcaagacctttctgtttccaacatatt 114  Q
    |||||||| ||||||||| |||||||||| ||  || ||||||||||||||||||||||   |||||||  ||| |   |||||| ||||| || |||||    
T  5160508 tgaaggagttaggagtgactttacctttcactcgtgaaggtttgacaaaaatggtggactcttctcttgtgggtgatagcctttcagtttctaaaatatt 5160607  T
Q  115 tcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggccagtgttgca 175  Q
    |||||| ||||||||||| ||||| || |||||  ||||||||| ||| | ||||| ||||    
T  5160608 tcacaaatctttcattgaagtaaatgaagaaggtgctgaagctgttgcagtcagtgctgca 5160668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 46236482 - 46236405
Alignment:
Q  205 agactttatagccgatcacccttttctatttctaattagagaagattcgacccaaacgatcatctttgccggacaggt 282  Q
    ||||||| |||| ||||||||||| ||||||||||||||||||| |||||||  ||| ||| ||||||| ||||||||    
T  46236482 agactttgtagctgatcaccctttcctatttctaattagagaagtttcgaccggaacaatcctctttgctggacaggt 46236405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 46484284 - 46484419
Alignment:
Q  20 aaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcaca 119  Q
    ||||||||||| ||| ||||||||||||||  ||||||| ||||||| |||||| |||||    ||  |||| | |||| |||  |||| ||||| ||||    
T  46484284 aaggagctaggtgtggttttacctttctctggtggaggtctgacaaagatggtgaactct----aa--tcaaaaactttgtgt--ccaatatattgcaca 46484375  T
Q  120 agtctttcattgatgtaaacgaggaaggcactgaagctgctgcg 163  Q
    | ||||||||||| ||||| || |||||||||||||||||||||    
T  46484376 aatctttcattgaagtaaatgaagaaggcactgaagctgctgcg 46484419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 51944130 - 51944185
Alignment:
Q  24 agctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactct 79  Q
    ||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||    
T  51944130 agctaggagtggttttacctttctcacctggaggttttacaaaaatggtggactct 51944185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 46474165 - 46474301
Alignment:
Q  20 aaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcaca 119  Q
    ||||||||||| ||| ||||||||||||||  || |||  ||||||||||||||||||||    ||  |||| | |||| | | ||||| ||||| ||||    
T  46474165 aaggagctaggtgtggttttacctttctctggtgaagggctgacaaaaatggtggactct----aa--tcaaaaactttttatgtccaatatattgcaca 46474258  T
Q  120 agtctttcattgatgtaaacgaggaaggcactgaagctgctgc 162  Q
    | | ||||||||| ||||| || ||||||||||||||||||||    
T  46474259 aatatttcattgaagtaaatgaagaaggcactgaagctgctgc 46474301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 4581197 - 4581132
Alignment:
Q  100 tgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggc 165  Q
    ||||||||| ||||||||||||||||| ||||| ||||| || | ||| |||||||||||||||||    
T  4581197 tgtttccaagatatttcacaagtcttttattgaagtaaatgaagcaggtactgaagctgctgcggc 4581132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 4613654 - 4613589
Alignment:
Q  100 tgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggc 165  Q
    ||||||||| ||||||||||||||||| ||||| ||||| || | ||| |||||||||||||||||    
T  4613654 tgtttccaagatatttcacaagtcttttattgaagtaaatgaagcaggtactgaagctgctgcggc 4613589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 47414053 - 47413941
Alignment:
Q  58 tttgacaaaaatggtggactctcttg------aaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcact 151  Q
    |||||| ||||||||||||||||||       ||| |||||||| || ||||||| | |||||||||||||||||||| || || || || ||||| |||    
T  47414053 tttgactaaaatggtggactctcttccagatcaagatcaagaccattttgtttcccagatatttcacaagtctttcatcgaagtgaatgaagaaggaact 47413954  T
Q  152 gaagctgctgcgg 164  Q
    |||||||||||||    
T  47413953 gaagctgctgcgg 47413941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 46532155 - 46532215
Alignment:
Q  20 aaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctc 80  Q
    |||||| |||||||  ||||||||||||||  |||||||||||||||||||| ||||||||    
T  46532155 aaggagttaggagttgttttacctttctctggtggaggtttgacaaaaatggcggactctc 46532215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 47413889 - 47413821
Alignment:
Q  204 tagactttatagccgatcacccttttctatttctaattagagaagattcgacccaaacgatcatctttg 272  Q
    |||||||| ||||||| ||||||||  |||||||||||||||||||||| ||| |||| ||| ||||||    
T  47413889 tagactttgtagccgaccaccctttcttatttctaattagagaagattcaaccgaaacaatcctctttg 47413821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 46554075 - 46554013
Alignment:
Q  18 tgaaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctc 80  Q
    |||||||| | |||||||||||||||||||||  ||||||||| |||||||| || |||||||    
T  46554075 tgaaggagttgggagtgattttacctttctctaatggaggtttaacaaaaatagtagactctc 46554013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 46491029 - 46491086
Alignment:
Q  110 atatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgcggcca 167  Q
    ||||||||||||||||| ||||||||||| || |||||||| ||||||| ||| ||||    
T  46491029 atatttcacaagtcttttattgatgtaaatgaagaaggcaccgaagctgttgcagcca 46491086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 46532224 - 46532285
Alignment:
Q  101 gtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactgaagctgctgc 162  Q
    ||||| ||||||||||| || ||||||||||| ||||| ||  |||||||||||||||||||    
T  46532224 gtttctaacatatttcaaaattctttcattgaagtaaatgaaaaaggcactgaagctgctgc 46532285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 5156671 - 5156717
Alignment:
Q  201 gaatagactttatagccgatcacccttttctatttctaattagagaa 247  Q
    ||||||||||| |||| |||||||||||  |||||||||||||||||    
T  5156671 gaatagactttgtagctgatcaccctttcttatttctaattagagaa 5156717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 53390988 - 53391030
Alignment:
Q  100 tgtttccaacatatttcacaagtctttcattgatgtaaacgag 142  Q
    |||||| || ||||||||||||||||||||||| |||||||||    
T  53390988 tgtttcaaatatatttcacaagtctttcattgaagtaaacgag 53391030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 20144865 - 20145020
Alignment:
Q  20 aaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcaca 119  Q
    |||||| |||||||| ||||||| |||| | |||||||||||||||||||||||||||||||||  ||||||  ||||||||||||  ||||||||||||    
T  20144865 aaggagttaggagtggttttaccattctttcctggaggtttgacaaaaatggtggactctcttgcgggtcaaagcctttctgtttctcacatatttcaca 20144964  T
Q  120 agtctttcattgatgtaaacgaggaaggcactgaagctgctgcggccagtgttgca 175  Q
    ||||||||||    |||||||| ||||| || |||| |||||| || |||| ||||    
T  20144965 agtctttcatcagagtaaacgaagaaggtaccgaagttgctgcagctagtgctgca 20145020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 175
Target Start/End: Complemental strand, 20168902 - 20168754
Alignment:
Q  27 taggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtcttt 126  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||||| ||| | |  ||||||  ||||| ||||||  |||||||||||||||||||    
T  20168902 taggagtgattttaccattctttcctggaggtttgacaaaaatggtggattctatcgcgggtcaaagcctttttgtttctcacatatttcacaagtcttt 20168803  T
Q  127 cattgatgtaaacgaggaaggcactgaagctgctgcggccagtgttgca 175  Q
    |||    |||||||| ||||| || |||| |||||| || |||| ||||    
T  20168802 catcagagtaaacgaagaaggtaccgaagttgctgcagctagtgctgca 20168754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 20359375 - 20359484
Alignment:
Q  20 aaggagctaggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcaca 119  Q
    |||||| ||||||||| |||||| |||| | |||||||||||| |||||||||||| ||| | |  ||||||  ||||| ||||||   |||||||||||    
T  20359375 aaggagttaggagtgactttaccattctttcctggaggtttgaaaaaaatggtggattctatcgcgggtcaaagcctttttgtttctcgcatatttcaca 20359474  T
Q  120 agtctttcat 129  Q
    ||||||||||    
T  20359475 agtctttcat 20359484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 17708516 - 17708636
Alignment:
Q  27 taggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtcttt 126  Q
    ||||| ||| ||||||||| |||   |||||||||||||||||||||||||||| |  | ||||||| |||| |||||||  ||||||||| ||||||||    
T  17708516 taggattgactttacctttttctatgggaggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtcttt 17708615  T
Q  127 cattgatgtaaacgaggaagg 147  Q
    |||||| ||||| || |||||    
T  17708616 cattgaagtaaatgaagaagg 17708636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 17699433 - 17699544
Alignment:
Q  53 ggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaaggcactg 152  Q
    |||||||||||||||||||||||||||| |  | ||||||| |||| |||||||  ||||||||| |||||||||||||| ||||| || ||||| ||      
T  17699433 ggaggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggtacga 17699532  T
Q  153 aagctgctgcgg 164  Q
    ||||||| ||||    
T  17699533 aagctgcagcgg 17699544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 17736196 - 17736275
Alignment:
Q  53 ggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattga 132  Q
    |||||||||||||||||||||||||||| |  | ||||||| ||||||||| ||| ||||||||| ||||||||||||||    
T  17736196 ggaggtttgacaaaaatggtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattga 17736275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 16722419 - 16722513
Alignment:
Q  53 ggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgatgtaaacgaggaagg 147  Q
    |||||||||||||||||||||||||||| |  | ||||||| |||| |||||||  ||||||||| |||||||||||||| ||||| || |||||    
T  16722419 ggaggtttgacaaaaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaagg 16722513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 17718340 - 17718477
Alignment:
Q  27 taggagtgattttacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtcttt 126  Q
    ||||| ||| ||||||||| |||   |||||||||||||||||||||||||||| |  | |||||||  | | ||||||| ||||| |||| |||||||     
T  17718340 taggattgactttacctttttctatgggaggtttgacaaaaatggtggactctcctataagtcaagaaatatttgtttccgacatacttcagaagtcttg 17718439  T
Q  127 cattgatgtaaacgaggaaggcactgaagctgctgcgg 164  Q
    |||||| |||||||| ||||| ||  ||||||| ||||    
T  17718440 cattgaagtaaacgaagaaggtacaaaagctgcagcgg 17718477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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