View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_84 (Length: 284)
Name: NF21242_low_84
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_84 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 49960337 - 49960597
Alignment:
| Q |
18 |
cctcatagattctattcagctttttcccaatacttatgccaaatcattgctgagtttcaggtaatggcaacttttatgtcacctcccccgtcttcaacct |
117 |
Q |
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| T |
49960337 |
cctcgtagattctattcagctttttcccaatacttatgccaaatcattgctgtgtttcaggtaatggcaacttttatgtcacctcccccgtcttcaacct |
49960436 |
T |
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| Q |
118 |
ttctcgtgtttcatcctcaagacaataatatcattgcaattggaatggaagatgcaaccattcatttttacaacgttagagttgatgaggtaattagtta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49960437 |
ttctcgtgtttcatcctcaagacaataatatcattgcaattggaatggaagatgcaaccattcatttttacaacgttagagttgatgaggtaattagtta |
49960536 |
T |
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| Q |
218 |
agcagccctttgaatttgtaattgtttcaagaatcatattgtgatgcggccccctttgctt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49960537 |
agcagccctttgaatttgtaattgtttcaagaatcatattgtgatgcggccctctttgctt |
49960597 |
T |
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