View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_87 (Length: 275)
Name: NF21242_low_87
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_87 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 54238043 - 54237780
Alignment:
| Q |
1 |
aagattatagaattcattgtgtaaaagcacattaaaaacaccttctaaataatagtctaaaacttttcaaattttataatccgaaccattagtttgaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54238043 |
aagattatagaattcattgtgtaaaagcacattaaaaacaccttctaaataatactctaaaacttttcagattttataatccgaaccattagtttgaaat |
54237944 |
T |
|
| Q |
101 |
cagaaacaagtaacgagtaggagtcgaagttaaatggaggtaggcccatgaataactagcccagctctttaccggcccagtacatgcatgcattgatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54237943 |
cagaaacaagtaacgagtaggagtcgaagttaaatggaggtaggcccatgaataactagcccagctctttaccggcccagtacatgcatgcattgatcat |
54237844 |
T |
|
| Q |
201 |
tgatgcaatgcaaaagcaaaagcaacgatcaatatgaaagaaacatttccagttctatagtata |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54237843 |
tgatgcaatgcaaaagcaaaagcaacgatcaatatgaaagaaacatttccagttctatagtata |
54237780 |
T |
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