View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_89 (Length: 268)
Name: NF21242_low_89
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_89 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 6494371 - 6494108
Alignment:
| Q |
1 |
accaccccaaaggaattccctttgaatcttcaccaatctcttccacactttcccgggcattttcatgaaagagagatnnnnnnnncgggatcgcatttat |
100 |
Q |
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| T |
6494371 |
accaccccaaaggaattccctttgaatcttcaccaatctcttccacactttcccgggcattttca----agagagatataaaaaacgggatcgcatttat |
6494276 |
T |
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| Q |
101 |
aaccgaattcaaaaggaaaattctacctccgaaactaatgaatttattgccccacgaattcaacattgtcttgacatgctccaaaagcggctcccaattc |
200 |
Q |
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| T |
6494275 |
aaccgaattcaaaaggacaattctacctccgaaactaatgaatttcttgccccacgaattcaaccttgtcttgacatgctccaaaagcggctcccacgtc |
6494176 |
T |
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| Q |
201 |
gaagaactcctcgaattagcacctaccggaaggcccaaatatttgaaaggaatagatcctttcattac |
268 |
Q |
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| T |
6494175 |
gaaaaactcctcgaattagcacctaccgaaaggcccaaatatttgaaaggaatagatcctttcattac |
6494108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 40387242 - 40387281
Alignment:
| Q |
215 |
attagcacctaccggaaggcccaaatatttgaaaggaata |
254 |
Q |
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| T |
40387242 |
attagctcctaccggaaggcccaaatacttgaaaggaata |
40387281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 14733552 - 14733598
Alignment:
| Q |
206 |
actcctcgaattagcacctaccggaaggcccaaatatttgaaaggaa |
252 |
Q |
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| T |
14733552 |
actccttgaattagcacctaccggaagacccaaatacttgaaaggaa |
14733598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 49455538 - 49455499
Alignment:
| Q |
215 |
attagcacctaccggaaggcccaaatatttgaaaggaata |
254 |
Q |
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| T |
49455538 |
attagcacctaccggaaggcccaagtacttgaaaggaata |
49455499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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