View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_low_99 (Length: 248)

Name: NF21242_low_99
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_low_99
NF21242_low_99
[»] chr7 (5 HSPs)
chr7 (1-239)||(1460628-1460867)
chr7 (10-95)||(29447156-29447244)
chr7 (13-195)||(12328048-12328224)
chr7 (13-109)||(24034286-24034385)
chr7 (13-112)||(39465240-39465340)
[»] chr8 (7 HSPs)
chr8 (12-232)||(32344876-32345099)
chr8 (12-232)||(32361484-32361707)
chr8 (39-232)||(12101086-12101272)
chr8 (147-239)||(9187776-9187868)
chr8 (13-106)||(37370140-37370236)
chr8 (10-121)||(9187650-9187764)
chr8 (23-79)||(16822511-16822570)
[»] chr4 (2 HSPs)
chr4 (13-239)||(24637936-24638165)
chr4 (20-121)||(33359248-33359352)
[»] chr1 (4 HSPs)
chr1 (10-114)||(27579155-27579260)
chr1 (35-239)||(25221955-25222156)
chr1 (73-126)||(43880116-43880169)
chr1 (11-92)||(30828602-30828682)
[»] chr2 (2 HSPs)
chr2 (13-121)||(31555410-31555521)
chr2 (154-239)||(31555325-31555410)
[»] chr6 (2 HSPs)
chr6 (36-121)||(4115667-4115752)
chr6 (149-239)||(4115766-4115856)
[»] scaffold0092 (1 HSPs)
scaffold0092 (74-239)||(6806-6970)
[»] chr5 (1 HSPs)
chr5 (13-219)||(43101604-43101813)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1460628 - 1460867
Alignment:
Q  1 ctagatgat-aagtatatgtcactataaatataatcaagaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagt 99  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  1460628 ctagatgatcaagtatatgtcactataaatataatcaagaaaaggaaaattatcattcatacactgagataaaaaaatttcaaatgagcaattagagagt 1460727  T
Q  100 aaaatagtgactcttaacatattcatcatcttaaaggtatgtcccactaacatgtgtgagatacaatacttattcttttatcgttgattatggaattatg 199  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  1460728 aaaatagtgactcttaacatattcatcctcttaaaggtatgtcccactaacatgtgtgagatacaatatttattcttttatcattgattatagaattatg 1460827  T
Q  200 ttgccaaaacaaatttttgtttctcatttcacttattcat 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1460828 ttgccaaaacaaatttttgtttctcatttcacttattcat 1460867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 29447156 - 29447244
Alignment:
Q  10 aagtatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattaga 95  Q
    ||||||||||||||||||||||||||||   ||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||||    
T  29447156 aagtatatgtcactataaatataatcaataagaaaatgaaaattatcattgatacattgagataaaatattttcaaaggagcaattaga 29447244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 12328224 - 12328048
Alignment:
Q  13 tatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtga 109  Q
    |||||||||||||||||||||||||   |||||||| |||||||||  |||   |||| |||| |||||||||| || |||||||||||||     ||||    
T  12328224 tatatgtcactataaatataatcaataagaaaaggataattatcatcgata---tgagttaaa-tattttcaaaggaacaattagagagta-----gtga 12328134  T
Q  110 ctcttaacatattcatcatcttaaaggtatgtcccactaacatgtgtgagatacaatacttattcttttatcgttgattatggaat 195  Q
    |||||| |||||||||| ||| |||| || ||||   |||||| ||||||||| ||||  |||||||  ||| |||||||||||||    
T  12328133 ctcttatcatattcatcctctcaaagttaagtcctcttaacatatgtgagataaaataactattcttggatcattgattatggaat 12328048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 24034385 - 24034286
Alignment:
Q  13 tatatgtcactataaatataatcaagaaaa---ggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtga 109  Q
    ||||||||||||||||||||||||| ||||   | |||||||||||  | |||||||||||   || ||| ||| ||||||||||| |||||||||||||    
T  24034385 tatatgtcactataaatataatcaataaaaaaagaaaaattatcatcgacacactgagatagtgtaattttaaaggagcaattagaaagtaaaatagtga 24034286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 39465340 - 39465240
Alignment:
Q  13 tatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtga 109  Q
    |||||||||||||||||||| ||||   |||||| ||||||| |||  |||   ||||||| ||||||||| |||||||||| | |||||||||||||||    
T  39465340 tatatgtcactataaatatactcaataagaaaagaaaaattagcatcgatag--tgagatacaatattttctaatgagcaatcatagagtaaaatagtga 39465243  T
Q  110 ctc 112  Q
    |||    
T  39465242 ctc 39465240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 32345099 - 32344876
Alignment:
Q  12 gtatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtg 108  Q
    ||||||||||||||||| ||||||||   ||||| |||||||||||| |||||| | |||||||||||||| ||| |||||| || ||||||||||||||    
T  32345099 gtatatgtcactataaacataatcaataagaaaaagaaaattatcatccatacattaagataaaatatttttaaaggagcaaatatagagtaaaatagtg 32345000  T
Q  109 actcttaacatattcatcatcttaaaggtatgtcccactaacatgtgtgagatacaatacttattcttttatcgttgattatggaattatgttgccaaaa 208  Q
    ||||||| ||||| ||| |||| ||||||| |||| | |||||| ||||| ||| |||| ||||||||  ||| ||||||||||||| | ||| ||||||    
T  32344999 actcttatcatatccataatctcaaaggtaagtcctattaacatatgtgacataaaatatttattcttggatcattgattatggaatcaagtttccaaaa 32344900  T
Q  209 caaatttttgtttctcatttcact 232  Q
     ||||||||||||||  |||||||    
T  32344899 taaatttttgtttcttttttcact 32344876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 32361707 - 32361484
Alignment:
Q  12 gtatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtg 108  Q
    ||||||||||||||||| ||||||||   ||||| |||||||||||| |||||| | |||||||||||||| ||| |||||| || ||||||||||||||    
T  32361707 gtatatgtcactataaacataatcaataagaaaaagaaaattatcatccatacattaagataaaatatttttaaaggagcaaatatagagtaaaatagtg 32361608  T
Q  109 actcttaacatattcatcatcttaaaggtatgtcccactaacatgtgtgagatacaatacttattcttttatcgttgattatggaattatgttgccaaaa 208  Q
    ||||||| ||||| ||| |||| ||||||| |||| | |||||| ||||| ||| |||| ||||||||  ||| ||||||||||||| | ||| ||||||    
T  32361607 actcttatcatatccataatctcaaaggtaagtcctattaacatatgtgacataaaatatttattcttggatcattgattatggaatcaagtttccaaaa 32361508  T
Q  209 caaatttttgtttctcatttcact 232  Q
     ||||||||||||||  |||||||    
T  32361507 taaatttttgtttcttttttcact 32361484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 232
Target Start/End: Original strand, 12101086 - 12101272
Alignment:
Q  39 aaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtgactcttaacatattcatcatcttaaaggta 138  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||  |||||||| ||||||| |||| |||||||| ||||| |||||||| |||||||    
T  12101086 aaaagaaaaattatcatcaatacactgagataaaatattttcaaagtagcaattaaagagtaagatagcgactcttatcatatccatcatctgaaaggta 12101185  T
Q  139 tgtcccactaacatgtgtgagatacaatacttattcttttatcgttgattatggaattatgttgccaaaacaaatttttgtttctcatttcact 232  Q
     |||        |||||||||||| |||| ||||||||  | | || |||||||||| | |||| |||||||||||||||||| || |||||||    
T  12101186 agtc-------gatgtgtgagataaaatatttattcttagaacatttattatggaatcaagttgtcaaaacaaatttttgtttgtcttttcact 12101272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 9187776 - 9187868
Alignment:
Q  147 taacatgtgtgagatacaatacttattcttttatcgttgattatggaattatgttgccaaaacaaatttttgtttctcatttcacttattcat 239  Q
    |||||| ||||||||| |||| ||||||||  ||| |||||||| || | | |||||||||||||||||||||||||| ||||||| ||||||    
T  9187776 taacatatgtgagataaaatatttattcttgaatcattgattatagattcaagttgccaaaacaaatttttgtttctcttttcactgattcat 9187868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 37370140 - 37370236
Alignment:
Q  13 tatatgtcactataaatataatcaagaaaagga---aaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatag 106  Q
    |||||||| |||||||||||||| | ||||| |   ||| ||||||| |||||||||||||||||||||| ||| |||||| ||||| |||||||||    
T  37370140 tatatgtcgctataaatataatcgataaaagaagggaaaatatcattaatacactgagataaaatatttttaaaggagcaactagagtgtaaaatag 37370236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 9187650 - 9187764
Alignment:
Q  10 aagtatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatag 106  Q
    ||||| ||||||||||||||||||||||   ||||| ||||  ||||||  ||| | |||||||||||||||||| | ||| |||||||| || |||||     
T  9187650 aagtacatgtcactataaatataatcaataagaaaatgaaacgtatcatcaatatattgagataaaatattttcataggagaaattagagtgttaaataa 9187749  T
Q  107 tgactcttaacatat 121  Q
     |||||||| |||||    
T  9187750 ggactcttatcatat 9187764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 16822511 - 16822570
Alignment:
Q  23 tataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatatttt 79  Q
    |||||||||||||||   ||||||||||||||||||  |||||  |||||||||||||||    
T  16822511 tataaatataatcaataagaaaaggaaaattatcatcgatacatcgagataaaatatttt 16822570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 24637936 - 24638165
Alignment:
Q  13 tatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtga 109  Q
    |||||| || |||||||||||||||   |||||| |||||||| ||  |||||||| ||||||||||||||||||||||||||| |  ||||| ||||||    
T  24637936 tatatgccattataaatataatcaacaagaaaagaaaaattataatcaatacactgggataaaatattttcaaatgagcaattaaaatgtaaattagtga 24638035  T
Q  110 ctcttaacatattcatcatcttaaaggtatgtcccactaacatgtgtgagatacaatacttattcttttatcgttgattatggaattatgttgccaaaac 209  Q
    || ||| ||||| |||||||| ||||||| ||||   |||||| || |||||| |||| ||||||||  ||| ||||||||||||| | |||| ||||||    
T  24638036 cttttatcatatccatcatctcaaaggtaagtcctcttaacatatgagagataaaatatttattcttggatcattgattatggaatcaagttgacaaaac 24638135  T
Q  210 aaatttttgtttctcatttcacttattcat 239  Q
    ||||||| ||||||| ||||||| ||||||    
T  24638136 aaattttcgtttctcttttcactgattcat 24638165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 33359248 - 33359352
Alignment:
Q  20 cactataaatataatcaag--aaaaggaaaattatcattc-atacactgagataaaatattttcaaatgagcaattagagagtaaaatagtgactcttaa 116  Q
    ||||||||||||||||||   ||||  ||||||||||||  |||||||||||||||||||||| |||  |||||||| |||||||||||||||||||||     
T  33359248 cactataaatataatcaattaaaaaaaaaaattatcatttgatacactgagataaaatatttttaaagaagcaattaaagagtaaaatagtgactcttat 33359347  T
Q  117 catat 121  Q
    |||||    
T  33359348 catat 33359352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 27579260 - 27579155
Alignment:
Q  10 aagtatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatag 106  Q
    ||||||||||| ||||||||||||||||   ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  27579260 aagtatatgtctctataaatataatcaattagaaaaagaaaattatcattgatacaccgagataaaatattttcaaatgagcaatt--agagtaaaatag 27579163  T
Q  107 tgactctt 114  Q
    ||||||||    
T  27579162 tgactctt 27579155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 25222156 - 25221955
Alignment:
Q  35 caagaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtgactcttaacatattcatcatcttaaa 134  Q
    |||||| || |||||||||||  ||||| ||||| |||||||||||||||||| ||||||||| ||||||||||||| ||| |||||| ||| ||| |||    
T  25222156 caagaatagcaaaattatcatctatacaatgagaaaaaatattttcaaatgagtaattagagaataaaatagtgacttttatcatatttatcctctcaaa 25222057  T
Q  135 ggtatgtcccactaacatgtgtgagatacaatacttattcttttatcgttgattatggaattatgttgccaaaacaaatttttgtttctcatttcactta 234  Q
    |||| ||||   ||  || | ||||||| |||| ||||||||  ||| |||||| |||||| |  ||||||||||||||||||||||||| ||| ||| |    
T  25222056 ggtaagtcctctta--atatatgagataaaatatttattcttgaatcattgattttggaatca-attgccaaaacaaatttttgtttctcttttaactga 25221960  T
Q  235 ttcat 239  Q
    |||||    
T  25221959 ttcat 25221955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 43880116 - 43880169
Alignment:
Q  73 atattttcaaatgagcaattagagagtaaaatagtgactcttaacatattcatc 126  Q
    ||||||||||| ||||||||| |||||||| |||||||||||| ||||| ||||    
T  43880116 atattttcaaaggagcaattaaagagtaaattagtgactcttatcatatacatc 43880169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 30828602 - 30828682
Alignment:
Q  11 agtatatgtcactataaatataatcaagaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaatt 92  Q
    ||||||||||| |||||||||||| ||  ||   |||||||||||| ||||||| | |||||||||||| ||| ||||||||    
T  30828602 agtatatgtcattataaatataattaatcaataaaaaattatcattgatacactcaaataaaatatttt-aaaggagcaatt 30828682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 31555521 - 31555410
Alignment:
Q  13 tatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtga 109  Q
    ||||||||||||||||||||| |||   ||||||||||||||||||  |||||||||||||||||||||||| | ||||||||| | |||||||||||||    
T  31555521 tatatgtcactataaatataaacaataagaaaaggaaaattatcatcgatacactgagataaaatattttcataggagcaattacatagtaaaatagtga 31555422  T
Q  110 ctcttaacatat 121  Q
    |||||| |||||    
T  31555421 ctcttatcatat 31555410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 31555410 - 31555325
Alignment:
Q  154 tgtgagatacaatacttattcttttatcgttgattatggaattatgttgccaaaacaaatttttgtttctcatttcacttattcat 239  Q
    ||||||||| |||| ||||||||  ||| ||||||||| ||| | |||||||||||||||||||||||||| ||| ||| ||||||    
T  31555410 tgtgagataaaatatttattcttggatcattgattatgaaatcaagttgccaaaacaaatttttgtttctcttttaactgattcat 31555325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 4115667 - 4115752
Alignment:
Q  36 aagaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtgactcttaacatat 121  Q
    |||||||| |||||||| ||  ||| ||| |||||||||||||||| | ||||||||| ||||||||||||||||||||| |||||    
T  4115667 aagaaaagaaaaattattatcgatatactaagataaaatattttcataggagcaattacagagtaaaatagtgactcttatcatat 4115752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 4115766 - 4115856
Alignment:
Q  149 acatgtgtgagatacaatacttattcttttatcgttgattatggaattatgttgccaaaacaaatttttgtttctcatttcacttattcat 239  Q
    |||| |||| |||| |||| ||||||||  ||| ||||||||||||| | ||| |||||| ||| ||||||||||| ||||| | ||||||    
T  4115766 acatatgtgggataaaatatttattcttaaatcattgattatggaatcaagttaccaaaagaaagttttgtttctcttttcattgattcat 4115856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 6806 - 6970
Alignment:
Q  74 tattttcaaatgagcaattagagagtaaaatagtgactcttaacatattcatcatcttaaaggtatgtcccactaacatgtgtgagatacaatacttatt 173  Q
    |||||| ||| || |||| ||||||||||||| ||||||||| |||||||||| ||| ||||||| | ||   |||||| ||||||||| |||| |||||    
T  6806 tattttgaaaggatcaataagagagtaaaataatgactcttatcatattcatcctctcaaaggtaggccctcgtaacatatgtgagataaaatatttatt 6905  T
Q  174 cttttatcgttgattatggaattatgttgccaaaacaaatttttgtttctcatttcacttattcat 239  Q
     ||  ||| |||| |||  ||| | |||||||||| ||||||||||||  | ||||||| ||||||    
T  6906 tttggatcattgactat-taatcaagttgccaaaataaatttttgttttccttttcactaattcat 6970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 43101604 - 43101813
Alignment:
Q  13 tatatgtcactataaatataatcaa---gaaaaggaaaattatcattcatacactgagataaaatattttcaaatgagcaattagagagtaaaatagtga 109  Q
    ||||||||| |||||||||||| ||   ||||| || ||||||||   || || ||||||| ||||||| |||| || |||||| ||||||||||| | |    
T  43101604 tatatgtcaatataaatataattaataagaaaaagataattatcaacgattcaatgagatataatatttacaaaggaacaattacagagtaaaataataa 43101703  T
Q  110 ctcttaacatattcatcatcttaaaggtatgtcccactaacatgtgtgagatacaatacttattcttttatcgttgattatggaattatgttgccaaaac 209  Q
    || ||| |||||||||||||| ||| ||| || |   |||||| || |||||| |||| ||||||||  ||  ||| ||||| ||| | || |||||||     
T  43101704 cttttatcatattcatcatctcaaatgtaagtactcttaacatatgcgagataaaatatttattcttggataattggttatgaaatcaagtagccaaaat 43101803  T
Q  210 aaatttttgt 219  Q
    ||||||||||    
T  43101804 aaatttttgt 43101813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University