View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21243_high_2 (Length: 362)
Name: NF21243_high_2
Description: NF21243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21243_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 299258 - 298913
Alignment:
| Q |
1 |
aaaatattccaaacaaaacttcatataaggaggcataatcttacctctgactccagctccttctccaagatacaaaccaaactggtttcatcaattatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
299258 |
aaaatattccaaacaaaacttcatatgaggaggcataatcttacctctgactccagctccttctccaagatacaaaccaaactggtttcatcaattatga |
299159 |
T |
|
| Q |
101 |
gcgccaatggagtagtgtttctttcttcctttcttagattccacttgggcttgcctgatgactgtgtcattgggaatatcaagatcaccatgtttaggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
299158 |
gcgccaatggagtagtgtttctttcttcctttcttagattccacttgggcttgcctgacgactgtgtcattgggaatatcaagatcaccatgtttaggat |
299059 |
T |
|
| Q |
201 |
tggttttgtgtgttagattctgatgttctccacttgaagatctcacaccaaatttgtctctagcatcagccagaaggtttctgcattcaacctctgaggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
299058 |
tggttttgtgtgttagattctgatgttctccacttgaagatctcacaccaaatttgtctctagcatcagccagaaggtttctgcattcaacctctgaggt |
298959 |
T |
|
| Q |
301 |
accatttataattatctgctgcatatttgcgcagagaagtttgcac |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
298958 |
accatttataattatctgctgcatatttgcgcagagaagtttgcac |
298913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 301422 - 301072
Alignment:
| Q |
1 |
aaaatattccaaacaaaactt-catataaggaggcataatcttacctctgactccagctccttctccaagatacaaaccaaactggtttcatcaattatg |
99 |
Q |
| |
|
|||||||| ||||||||| || ||||||| || | ||||| || ||||||||||||| || ||||||||| || | |||||||||||| ||||||||||| |
|
|
| T |
301422 |
aaaatatttcaaacaaaaatttcatataaagaaggataatattgcctctgactccagttctttctccaaggtatagaccaaactggttccatcaattatg |
301323 |
T |
|
| Q |
100 |
agcgccaatggagtagtgtttcttt---cttcctttcttagattccacttgggcttgcctgatgactgtgt--cattgggaatatcaagatcaccatgtt |
194 |
Q |
| |
|
|| |||||||||||||||||| ||| |||| |||| || ||||||||||||| ||| |||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
301322 |
agtgccaatggagtagtgttttttttctcttcttttcctaaattccacttgggcatgcttgatgactttgtatcattgggaatatcaagatcaccatgtt |
301223 |
T |
|
| Q |
195 |
taggattggttttgtgtgttagattctgatgttctccacttgaagatctcacaccaaatttgtctctagcatcagccagaaggtttctgcattcaacctc |
294 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
301222 |
tagcattggttttgtgctttagattctgatgttctccacttgaagatctcacaccaaatttgtctctagcataagccaaaaggtttctgcattcaacctc |
301123 |
T |
|
| Q |
295 |
tgaggtaccatttataattatctgctgcatatttgcgcagagaagtttgca |
345 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
301122 |
tgaggtaccgtttataattatctgctgcatatttgtgcagagaagtttgca |
301072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 345
Target Start/End: Original strand, 27465123 - 27465429
Alignment:
| Q |
41 |
ttacctctgactccagctccttctccaagatacaaaccaaactggtttcatcaattatgagcgccaatggagtagtgtttctttcttcctttcttagatt |
140 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| |||||||||| | ||||||||||||| ||||||||| || ||| |||||| |||| | |||| |
|
|
| T |
27465123 |
ttacctctgactccaattccttctccaaaatataaaccaaactattcccatcaattatgagtgccaatggaatatcagttccttcttcgtttcctggatt |
27465222 |
T |
|
| Q |
141 |
ccacttgggcttgcctgatgactgtgt--cattgggaatatcaagatcaccatgtttaggattggttttgtgtgttagattctgatgttctccacttgaa |
238 |
Q |
| |
|
||| |||||| | ||||| || |||||| ||||||||| |||||||||| || ||||||||| | | |||||||||| ||| || |||| |
|
|
| T |
27465223 |
ccatttgggcaaactcattgactttgaaccattggaaatatcaagttcaccatgttcagcattggttttattcctcagattctgattccctctacatgaa |
27465322 |
T |
|
| Q |
239 |
gatctcacaccaaatttgtctctagcatcagccagaaggtttctgcattcaacctctgaggtaccatttataattatctgctgcatatttgcgcagagaa |
338 |
Q |
| |
|
|||||||||||| ||||| || | || ||| ||| ||| ||||| ||||| ||||||| || ||||| |||| || |||||||||| ||| | ||||| |
|
|
| T |
27465323 |
gatctcacaccatatttggctatggcgtcacccaaaagatttctacattcctcctctgaagtgccattaataacaatttgctgcatatctgcactgagaa |
27465422 |
T |
|
| Q |
339 |
gtttgca |
345 |
Q |
| |
|
||||||| |
|
|
| T |
27465423 |
gtttgca |
27465429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University