View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21243_high_3 (Length: 289)
Name: NF21243_high_3
Description: NF21243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21243_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 48685117 - 48685375
Alignment:
| Q |
16 |
atattaacactgtataccttttccagtaacatgcatgcatgagctcatcctatgtcatttttcctttcttcatacgacaagccaccagtttggtcaatta |
115 |
Q |
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| T |
48685117 |
atattaatactgtatacattttccagtaacatgcatgcatgagctcatcctaagtcatttttcctttcttcatacgacaagccaccagtttggtcaatta |
48685216 |
T |
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| Q |
116 |
gcaaattgaacatacatacatgaattaattaatgtacgtaacaagggactttttgcatgttctttctctttacttttcaattttagtactatg--nnnnn |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48685217 |
gcaaattgaacatacatacatgaattaattaatgtacgtaacaagggactttttgcatgttctttctctttacttttcaattttagtactatgttttttt |
48685316 |
T |
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| Q |
214 |
nnnagttctcatggaatgaggtcatagtattaatttgcatccgcaactaggtggcattt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48685317 |
tttagttctcatggaatgaggtcatagtattaatttgcatccgcaactaggtggcattt |
48685375 |
T |
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