View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21243_high_4 (Length: 253)
Name: NF21243_high_4
Description: NF21243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21243_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 24203492 - 24203603
Alignment:
| Q |
1 |
taaggtttattggttcctttgttttgaagcggacaagcgaactgaatagccttgcaaataaatgtgccgaacaggttttgggaatgaagacttcaaaaac |
100 |
Q |
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| T |
24203492 |
taaggtttattggttcctttgttttgaagcggacaagcgaactgaagagccttgcaaataaatgtgctgaacaggttttgggaatgaagacttcaaaaac |
24203591 |
T |
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| Q |
101 |
attagtaagtct |
112 |
Q |
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||| |||||||| |
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| T |
24203592 |
attggtaagtct |
24203603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 24203696 - 24203779
Alignment:
| Q |
159 |
ttctttgcttattaacaaaatgcagaaaatgtcatactagtcccagtctccaaaatatttgttatttccttctttttcctcttg |
242 |
Q |
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| T |
24203696 |
ttctttgcttattaacagaatgcagataatgtcatactagttccagtctccaaaatgtttgttatttccttcattttccccttg |
24203779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 29409788 - 29409653
Alignment:
| Q |
15 |
tcctttgttttgaagcggacaagcgaactgaatagccttgcaaataaatgtgccgaacaggttttgggaatgaagacttcaaaaacattagtaagtctac |
114 |
Q |
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| T |
29409788 |
tcctttgttttgaagcagacaagcgaactcaagagctttgcaaacaaatgtgctgaacaggttttggaaatgaagtcttcaaaagcattggtgagtctac |
29409689 |
T |
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| Q |
115 |
cttggcttttaccttcgtgt-ttttctttatctgta |
149 |
Q |
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| T |
29409688 |
tttggcttttacgtttgtgtgttttctttaactgta |
29409653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 29409056 - 29409010
Alignment:
| Q |
162 |
tttgcttattaacaaaatgcagaaaatgtcatactagtcccagtctc |
208 |
Q |
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| T |
29409056 |
tttgctttttaacagaatgcagataatgtcatactagttccagtctc |
29409010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 27560381 - 27560263
Alignment:
| Q |
1 |
taaggtttattggttcctttgttttgaagcggacaagcgaactgaatagccttgcaaataaatgtgccgaacaggttttgggaatgaagacttcaaaaac |
100 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||| || |||||| ||| |||||||| ||||||||||||| ||| ||| |||||||| | |
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| T |
27560381 |
taaggtttattgattcctttgttttgaagcagacaagcgaactcaagagccttacaatcaaatgtgctgaacaggttttggaaataaagtcttcaaaagc |
27560282 |
T |
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| Q |
101 |
attagtaagtctaccttgg |
119 |
Q |
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||| ||||||||||||||| |
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| T |
27560281 |
attggtaagtctaccttgg |
27560263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 36667873 - 36667807
Alignment:
| Q |
1 |
taaggtttattggttcctttgttttgaagcggacaagcgaactgaatagccttgcaaataaatgtgc |
67 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||| || ||||||||||| |||||||| |
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| T |
36667873 |
taaggtttattgattcctttgttttgaagcagacaagcgaactcaagagccttgcaaacaaatgtgc |
36667807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 36662205 - 36662124
Alignment:
| Q |
162 |
tttgcttattaacaaaatgcagaaaatgtcatactagtcccagtctccaaaatatttgttatttccttctttttcctcttgc |
243 |
Q |
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||||||| ||| || |||||| | |||||||||||||| ||| |||||| || ||| |||||||| ||||||||| ||||| |
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| T |
36662205 |
tttgctttttagcagaatgcacataatgtcatactagttccaatctccataaggttttttatttccctctttttccccttgc |
36662124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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