View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21243_low_3 (Length: 307)

Name: NF21243_low_3
Description: NF21243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21243_low_3
NF21243_low_3
[»] chr3 (22 HSPs)
chr3 (158-290)||(6733253-6733385)
chr3 (158-290)||(6944631-6944763)
chr3 (158-290)||(6782647-6782779)
chr3 (160-290)||(6941520-6941650)
chr3 (158-290)||(7585044-7585180)
chr3 (190-290)||(6557033-6557133)
chr3 (158-226)||(6410321-6410389)
chr3 (16-75)||(6941377-6941436)
chr3 (226-290)||(6944918-6944982)
chr3 (240-290)||(7585535-7585585)
chr3 (240-290)||(6523804-6523854)
chr3 (247-290)||(6841893-6841936)
chr3 (248-290)||(6523923-6523965)
chr3 (29-75)||(6531050-6531096)
chr3 (248-290)||(7585308-7585350)
chr3 (247-290)||(5247848-5247891)
chr3 (247-290)||(6530845-6530888)
chr3 (251-290)||(6880191-6880230)
chr3 (26-68)||(6782866-6782908)
chr3 (247-290)||(6242988-6243031)
chr3 (251-290)||(6897763-6897802)
chr3 (247-280)||(6451120-6451153)
[»] scaffold0425 (1 HSPs)
scaffold0425 (214-290)||(10081-10157)
[»] scaffold2053 (1 HSPs)
scaffold2053 (232-290)||(571-629)
[»] chr7 (1 HSPs)
chr7 (247-289)||(6575639-6575681)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 158 - 290
Target Start/End: Original strand, 6733253 - 6733385
Alignment:
Q  158 tatgttcgtaccttccgaaccaaaaagttttgaccaaaagtgggacccataacatctcattccagcttaatgttgtcaatccacacacgagggatgtgac 257  Q
    |||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| ||||||||   ||||||||||||   ||||||||||    
T  6733253 tatgttcgtaccttccaaaccaaaaagatttgaccaaacgtgggacccataacatctcattcctgcttaatgccatcaatccacacattcgggatgtgac 6733352  T
Q  258 taattgtatgccaacgctctcctccctcctttt 290  Q
    |||||||||||||||||||||||||||||||||    
T  6733353 taattgtatgccaacgctctcctccctcctttt 6733385  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 158 - 290
Target Start/End: Original strand, 6944631 - 6944763
Alignment:
Q  158 tatgttcgtaccttccgaaccaaaaagttttgaccaaaagtgggacccataacatctcattccagcttaatgttgtcaatccacacacgagggatgtgac 257  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | ||||||   |||||||||||||  ||||||||||    
T  6944631 tatgttcgtaccttccaaaccaaaaaggtttgaccaaaagtgggacccataacatctcattcctgtttaatgcgatcaatccacacactcgggatgtgac 6944730  T
Q  258 taattgtatgccaacgctctcctccctcctttt 290  Q
     ||||||||||||||||||||||||||||||||    
T  6944731 aaattgtatgccaacgctctcctccctcctttt 6944763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 158 - 290
Target Start/End: Complemental strand, 6782779 - 6782647
Alignment:
Q  158 tatgttcgtaccttccgaaccaaaaagttttgaccaaaagtgggacccataacatctcattccagcttaatgttgtcaatccacacacgagggatgtgac 257  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||| || ||||   ||||||| ||||||||||||||||||    
T  6782779 tatgttcgtacattcagaaccaaaaaggtttgaccaaaagtgggacccataacttctcattccggcctaattccgtcaatcaacacacgagggatgtgac 6782680  T
Q  258 taattgtatgccaacgctctcctccctcctttt 290  Q
     ||||||||||||||||||||||||||||||||    
T  6782679 aaattgtatgccaacgctctcctccctcctttt 6782647  T

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Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 160 - 290
Target Start/End: Original strand, 6941520 - 6941650
Alignment:
Q  160 tgttcgtaccttccgaaccaaaaagttttgaccaaaagtgggacccataacatctcattccagcttaatgttgtcaatccacacacgagggatgtgacta 259  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | ||||  ||||||   |||   ||||||||||| |    
T  6941520 tgttcgtaccttccgaaccaaaaagatttgaccaaaagtgggacccataacatctcattcctgttcaatgaggtcaattgtcaccatagggatgtgacaa 6941619  T
Q  260 attgtatgccaacgctctcctccctcctttt 290  Q
    |||||||||||||||||||||||||||||||    
T  6941620 attgtatgccaacgctctcctccctcctttt 6941650  T

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Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 158 - 290
Target Start/End: Original strand, 7585044 - 7585180
Alignment:
Q  158 tatgttcgtaccttccgaaccaaaaagttttgaccaaaagtgggacccataacatctcattccagcttaatgttgtc----aatccacacacgagggatg 253  Q
    |||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| ||||||| |  ||    ||||||||||   ||||||    
T  7585044 tatgttcgtaccttccaaaccaaaaagatttgaccaaatgtgggacccataacatctcattcctgcttaatttcatcaattaatccacacattcgggatg 7585143  T
Q  254 tgactaattgtatgccaacgctctcctccctcctttt 290  Q
    ||| |||||||||||||||||||||||||||||||||    
T  7585144 tgagtaattgtatgccaacgctctcctccctcctttt 7585180  T

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Target: chr3; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 6557133 - 6557033
Alignment:
Q  190 accaaaagtgggacccataacatctcattccagcttaatgttgtcaatccacacacgagggatgtgactaattgtatgccaacgctctcctccctccttt 289  Q
    ||||||||||||||||||||||||||||| | | | ||| | |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  6557133 accaaaagtgggacccataacatctcatttctgttgaatatagtcaatccacacataagggatgtgactaattgtatgccaacgctctcctccctccttt 6557034  T
Q  290 t 290  Q
    |    
T  6557033 t 6557033  T

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Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 6410389 - 6410321
Alignment:
Q  158 tatgttcgtaccttccgaaccaaaaagttttgaccaaaagtgggacccataacatctcattccagctta 226  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  6410389 tatgttcgtaccttccgaaccaaaaagatttgaccaaaagtgggacccataacatctcattcctgctta 6410321  T

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Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 6941377 - 6941436
Alignment:
Q  16 atcaccacaatcccaaactaccatcacaccattccaaacgcagaatccctcttggcctgg 75  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  6941377 atcaccacaatcccaaactcccatcacaccattccaaacgcagaatccctcttgacctgg 6941436  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 6944918 - 6944982
Alignment:
Q  226 aatgttgtcaatccacacacgagggatgtgactaattgtatgccaacgctctcctccctcctttt 290  Q
    ||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  6944918 aatgtcgtcaatccacacattcgggatgtgactaattgtatgccaacgctctcctccctcctttt 6944982  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 7585535 - 7585585
Alignment:
Q  240 acacacgagggatgtgactaattgtatgccaacgctctcctccctcctttt 290  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7585535 acacaccagggatgtgactaattgtatgccaacgctctcctccctcctttt 7585585  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 6523854 - 6523804
Alignment:
Q  240 acacacgagggatgtgactaattgtatgccaacgctctcctccctcctttt 290  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  6523854 acacacaagggatgtgactaattgtatgccaaagctctcctccctcctttt 6523804  T

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Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 6841936 - 6841893
Alignment:
Q  247 agggatgtgactaattgtatgccaacgctctcctccctcctttt 290  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  6841936 agggatgtgactaattgtgtgccaacgctctcctccctcctttt 6841893  T

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Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 248 - 290
Target Start/End: Complemental strand, 6523965 - 6523923
Alignment:
Q  248 gggatgtgactaattgtatgccaacgctctcctccctcctttt 290  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  6523965 gggatgtgagtaattgtatgccaacgctctcctccctcctttt 6523923  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 6531096 - 6531050
Alignment:
Q  29 caaactaccatcacaccattccaaacgcagaatccctcttggcctgg 75  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  6531096 caaactaccctcacaccattccaaacgcagaatccctcttagcctgg 6531050  T

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Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 7585308 - 7585350
Alignment:
Q  248 gggatgtgactaattgtatgccaacgctctcctccctcctttt 290  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  7585308 gggatgtgactaattgtatgccaacactctcctccctcctttt 7585350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 5247848 - 5247891
Alignment:
Q  247 agggatgtgactaattgtatgccaacgctctcctccctcctttt 290  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  5247848 agggatgtgacgaattgtatgccaacactctcctccctcctttt 5247891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 290
Target Start/End: Complemental strand, 6530888 - 6530845
Alignment:
Q  247 agggatgtgactaattgtatgccaacgctctcctccctcctttt 290  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  6530888 agggatgtgaccaattgtatgccaacgctctcgtccctcctttt 6530845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 6880191 - 6880230
Alignment:
Q  251 atgtgactaattgtatgccaacgctctcctccctcctttt 290  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  6880191 atgtgactaattgtatgccaacgctctccttcctcctttt 6880230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 6782908 - 6782866
Alignment:
Q  26 tcccaaactaccatcacaccattccaaacgcagaatccctctt 68  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  6782908 tcccaaactaccctcacaccgttccaaacgcagaatccctctt 6782866  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 6242988 - 6243031
Alignment:
Q  247 agggatgtgactaattgtatgccaacgctctcctccctcctttt 290  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||    
T  6242988 agggatgtgacaaattgtatgccaacgctctccttgctcctttt 6243031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 6897763 - 6897802
Alignment:
Q  251 atgtgactaattgtatgccaacgctctcctccctcctttt 290  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  6897763 atgtgactaattgtatgccaacactctccttcctcctttt 6897802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Complemental strand, 6451153 - 6451120
Alignment:
Q  247 agggatgtgactaattgtatgccaacgctctcct 280  Q
    ||||||||||||||||| ||||||||||||||||    
T  6451153 agggatgtgactaattgaatgccaacgctctcct 6451120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 10157 - 10081
Alignment:
Q  214 tcattccagcttaatgttgtcaatccacacacgagggatgtgactaattgtatgccaacgctctcctccctcctttt 290  Q
    ||||||| |||||||||||||||| ||||||   |||||||||||||||||||||||| ||||||||||||||||||    
T  10157 tcattcctgcttaatgttgtcaatgcacacattcgggatgtgactaattgtatgccaaagctctcctccctcctttt 10081  T

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Target: scaffold2053 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 629 - 571
Alignment:
Q  232 gtcaatccacacacgagggatgtgactaattgtatgccaacgctctcctccctcctttt 290  Q
    |||||||  |||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  629 gtcaatcgtcacatgagggatgtgactaattgtatgccaattctctcctccctcctttt 571  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 6575681 - 6575639
Alignment:
Q  247 agggatgtgactaattgtatgccaacgctctcctccctccttt 289  Q
    |||||| |||| ||||||||||||||| |||||||||||||||    
T  6575681 agggatttgacgaattgtatgccaacgatctcctccctccttt 6575639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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