View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21244_low_3 (Length: 429)
Name: NF21244_low_3
Description: NF21244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21244_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 24 - 409
Target Start/End: Original strand, 13205502 - 13205885
Alignment:
| Q |
24 |
ccgtagttgccagaattcttgcccgcaatgtagtcaacattcaatggatcactggtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcgaa |
123 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13205502 |
ccgtagttgccaaaattcttgcctgcaatgtggtcaacattcaatggatcacttgtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcgaa |
13205601 |
T |
|
| Q |
124 |
atgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgacgcaaaagcgacggtagcataccaattattggcaaattaat |
223 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13205602 |
atgttcctccattacgtttcaaaattaaggttagataatcatggaatttgaataagtgacgcaaaagcgacggtagcataccaattattggcaaattaat |
13205701 |
T |
|
| Q |
224 |
tggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatggctagtaatcctccaatacactgaattattgacattgtagat |
323 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13205702 |
tggtaaacttccatatctattgcgtctccagtagtagatgtataggaagattagaatggctagtaatcctccaatacactgaattattgacattgtagat |
13205801 |
T |
|
| Q |
324 |
ttactaaagtgtgtgttttcaaattgcatgtgtttttcatgcatgcttataaaatgtgtacatgctttacacttatatagccttta |
409 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13205802 |
ttactaaa--gtgtgttttcaaattgcatgtgtttttcatgcatgcttataaaatgtgtacatgctttacacttatatagccttta |
13205885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 24 - 409
Target Start/End: Original strand, 13008231 - 13008618
Alignment:
| Q |
24 |
ccgtagttgccagaattcttgcccgcaatgtagtcaacattcaatggatcactggtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcgaa |
123 |
Q |
| |
|
|||||||||||| ||||||||| ||| |||| |||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13008231 |
ccgtagttgccaaaattcttgctcgcgatgtgatcaacattcatcggatcactggtaccgataaagcttgtgtttgtgaaccaagctccttcaaatcgaa |
13008330 |
T |
|
| Q |
124 |
atgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgacgcaaaagcgacggtagcataccaattattggcaaattaat |
223 |
Q |
| |
|
|||||||||||| | |||||||| ||||||| || ||||||||| ||| | | |||| |||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
13008331 |
atgttcctccatgatgtttcaaaaataaggttgtatgatcatggaaattggacaggtgatgcaaaatcccaggtagcataccaattattggccaattaat |
13008430 |
T |
|
| Q |
224 |
tggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatggctagtaatcctccaatacactgaattattgacattgtagat |
323 |
Q |
| |
|
|||| || | ||| ||||||||||||||| |||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13008431 |
tggtgcaaattcatctctattgcgtctccaatagtagatgtataggaagattaggatggctacaaatcctccaatacactgaattatggacattgtagat |
13008530 |
T |
|
| Q |
324 |
ttactaaagtgtgtgttttcaaattgcatgtgtttttcatgcatgcttataaaatgtgtac--atgctttacacttatatagccttta |
409 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| |||||||| |||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
13008531 |
ttactaaagtatgtgttttcaaattgcatgtgtctttgatgcatgcatataaattgtgtacatatgctttacacttatatagccttta |
13008618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 86 - 409
Target Start/End: Original strand, 13162629 - 13162952
Alignment:
| Q |
86 |
aaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgacgc |
185 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| | ||||||||||||| ||||||| | |||| ||||||||||||| | | | | ||| || |
|
|
| T |
13162629 |
aaagcttgtgtttgtgaaccagggtccttgaaatcgataagttcctccattacgcttcaaaacaatggttgcataatcatggaaatcggagagatgatgc |
13162728 |
T |
|
| Q |
186 |
aaaagcgacggtagcataccaattattggcaaattaattggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatggcta |
285 |
Q |
| |
|
|||| | ||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
13162729 |
aaaaatgttggtagcataccaattattggccaattaattggtacaaattcatctctattgcgtctccaatagtaaatgtataggaagattaggatggcta |
13162828 |
T |
|
| Q |
286 |
gtaatcctccaatacactgaattattgacattgtagatttactaaagtgtgtgttttcaaattgcatgtgtttttcatgcatgcttataaaatgtgtaca |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13162829 |
caaatcctccaatacactgaattattgacattatagatttactaaagtgtgtgttttcaaattgcatgtgtttttcatgcatgcttttaaaatgtgtaca |
13162928 |
T |
|
| Q |
386 |
tgctttacacttatatagccttta |
409 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
13162929 |
tgctttacacttatatagccttta |
13162952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 82 - 409
Target Start/End: Original strand, 13130932 - 13131259
Alignment:
| Q |
82 |
cgataaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtg |
181 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||| | |||||||||| || ||||||| | |||| |||||||||| | | | | | || |
|
|
| T |
13130932 |
cgataaagcttgtgtttgtgaaccagggcccttgaaatcgacaagttcctccataacgcttcaaaacaatggttgaataatcatggtaatcggagagatg |
13131031 |
T |
|
| Q |
182 |
acgcaaaagcgacggtagcataccaattattggcaaattaattggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatg |
281 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||||| |||||||| ||| | | ||| ||||||||||||| | |||| |||||||||||||||||| ||| |
|
|
| T |
13131032 |
acacaaaaatgacggtagtataccaattattggccaattaattagtaaaagttcatctctattgcgtctcgaatagtagatgtataggaagattaggatg |
13131131 |
T |
|
| Q |
282 |
gctagtaatcctccaatacactgaattattgacattgtagatttactaaagtgtgtgttttcaaattgcatgtgtttttcatgcatgcttataaaatgtg |
381 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13131132 |
gttacaaatcctccaatacactgaattattgacattgtagttttactaaagtgtatgtttgcaaattgcatgtgtctttcatgcatgcttataaaatgtg |
13131231 |
T |
|
| Q |
382 |
tacatgctttacacttatatagccttta |
409 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
|
|
| T |
13131232 |
tacatggtttacacttatatagccttta |
13131259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 24 - 324
Target Start/End: Original strand, 13214519 - 13214819
Alignment:
| Q |
24 |
ccgtagttgccagaattcttgcccgcaatgtagtcaacattcaatggatcactggtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcgaa |
123 |
Q |
| |
|
||||| |||||| ||||||||| |||||||| | |||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13214519 |
ccgtaattgccaaaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagcttgtgtttgtgaaccaggctcactcaaatcgaa |
13214618 |
T |
|
| Q |
124 |
atgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgacgcaaaagcgacggtagcataccaattattggcaaattaat |
223 |
Q |
| |
|
| ||||||||| | |||||||| ||||||| |||||||||||| ||| | | | ||||||||| || |||||||||||||||||||||| |||| || |
|
|
| T |
13214619 |
acattcctccatgatgtttcaaaactaaggttgtataatcatggaaattggacaggggacgcaaaatcgtcggtagcataccaattattggccaattgat |
13214718 |
T |
|
| Q |
224 |
tggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatggctagtaatcctccaatacactgaattattgacattgtagat |
323 |
Q |
| |
|
||||||| || ||| |||||||| |||||| |||| ||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13214719 |
tggtacaatttcatctctattgcatctccaatagtggatgtatagcaagattaggattgctagaaatcctccaatacactgaattattgacattgtagat |
13214818 |
T |
|
| Q |
324 |
t |
324 |
Q |
| |
|
| |
|
|
| T |
13214819 |
t |
13214819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 82 - 408
Target Start/End: Original strand, 13095503 - 13095829
Alignment:
| Q |
82 |
cgataaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtg |
181 |
Q |
| |
|
||||||||||| ||| |||||||||| |||| || | |||| |||||||||| | ||||||| | |||| ||||||||||||| | | | | || |
|
|
| T |
13095503 |
cgataaagcttatgtcagtgaaccagggccctttaattagaaaagttcctccatggcgcttcaaaacaatggttgcataatcatggaaatcggagagatg |
13095602 |
T |
|
| Q |
182 |
acgcaaaagcgacggtagcataccaattattggcaaattaattggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatg |
281 |
Q |
| |
|
| |||||| | |||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||| |||| |||||||||||||||||| ||| |
|
|
| T |
13095603 |
atgcaaaaatgccggtagcataccaattattggccaattaattggtacaaattcatctctattgcgtctccaatagtagatgtataggaagattaggatg |
13095702 |
T |
|
| Q |
282 |
gctagtaatcctccaatacactgaattattgacattgtagatttactaaagtgtgtgttttcaaattgcatgtgtttttcatgcatgcttataaaatgtg |
381 |
Q |
| |
|
| ||| || ||||||||||||||||||||||||||||||| |||| || ||||| ||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13095703 |
gttagaaaccctccaatacactgaattattgacattgtagttttattacagtgtatgtttgcaaattgcatgtgtctttcatgcatgcttataaaatgtg |
13095802 |
T |
|
| Q |
382 |
tacatgctttacacttatatagccttt |
408 |
Q |
| |
|
|||| || |||| |||||||||||||| |
|
|
| T |
13095803 |
tacaagcattacccttatatagccttt |
13095829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 24 - 331
Target Start/End: Complemental strand, 13069337 - 13069030
Alignment:
| Q |
24 |
ccgtagttgccagaattcttgcccgcaatgtagtcaacattcaatggatcactggtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcgaa |
123 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
13069337 |
ccgtagttgccaaaattcttgctcgcaatgtgttcaacattcattggatcactggtaccaataaagcttgtgtttgtgaaccaggctcctccaaatctaa |
13069238 |
T |
|
| Q |
124 |
atgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgacgcaaaagcgacggtagcataccaattattggcaaattaat |
223 |
Q |
| |
|
| |||||||||| | |||||||||||||||| || ||||||||| ||| | | || || || ||||| | |||||||||||| ||||||| ||||||| |
|
|
| T |
13069237 |
acgttcctccatgatgtttcaaaattaaggttgcacgatcatggaaattggacaggttacacataagcgccagtagcataccaaatattggccaattaat |
13069138 |
T |
|
| Q |
224 |
tggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatggctagtaatcctccaatacactgaattattgacattgtagat |
323 |
Q |
| |
|
||||||| | ||| ||||||||||||||| |||| |||||||| ||||||||| |||||| |||||||||| ||||||||| | ||||| | ||| |
|
|
| T |
13069137 |
tggtacaaattcatctctattgcgtctccaatagtggatgtataagaagattaggatggctgccaatcctccaacacactgaatagtgcacattttcgat |
13069038 |
T |
|
| Q |
324 |
ttactaaa |
331 |
Q |
| |
|
|||||||| |
|
|
| T |
13069037 |
ttactaaa |
13069030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 24 - 285
Target Start/End: Original strand, 13102031 - 13102292
Alignment:
| Q |
24 |
ccgtagttgccagaattcttgcccgcaatgtagtcaacattcaatggatcactggtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcgaa |
123 |
Q |
| |
|
||||| |||| | ||||||||| |||||||| | |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13102031 |
ccgtaattgctaaaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagccagtgtttgtgaaccaggctccttcaaatcgaa |
13102130 |
T |
|
| Q |
124 |
atgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgacgcaaaagcgacggtagcataccaattattggcaaattaat |
223 |
Q |
| |
|
| |||||||||| | ||| |||| ||||||| || ||||||||| ||| | | |||||||||||||| ||||||||||||||||||||| |||| || |
|
|
| T |
13102131 |
acgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgctggtagcataccaattattggccaattgat |
13102230 |
T |
|
| Q |
224 |
tggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatggcta |
285 |
Q |
| |
|
||||| | || ||| |||||| ||||||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
13102231 |
tggtaaaatttcatctctattacgtctccgacagtagatgtataggaagattaggatggcta |
13102292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 292 - 409
Target Start/End: Complemental strand, 13136469 - 13136352
Alignment:
| Q |
292 |
ctccaatacactgaattattgacattgtagatttactaaagtgtgtgttttcaaattgcatgtgtttttcatgcatgcttataaaatgtgtacatgcttt |
391 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13136469 |
ctccaagacactgaattattgacattgtagatttactaaagtgtgtgttttcaaattgaatgtgtttttcatgcatgcttataaaatgtgtacatgcttt |
13136370 |
T |
|
| Q |
392 |
acacttatatagccttta |
409 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13136369 |
acacttatatagccttta |
13136352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 288 - 412
Target Start/End: Original strand, 13102457 - 13102581
Alignment:
| Q |
288 |
aatcctccaatacactgaattattgacattgtagatttactaaagtgtgtgttttcaaattgcatgtgtttttcatgcatgcttataaaatgtgtacatg |
387 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13102457 |
aatcctccaatacactgaattatagacattgaagatttactaaagggtatgtttataaattgcatgtgtctttcatgcatgcttataaaatgtgtacatg |
13102556 |
T |
|
| Q |
388 |
ctttacacttatatagcctttactg |
412 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
13102557 |
ctttacacttatatagcctttactg |
13102581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 409
Target Start/End: Complemental strand, 30367251 - 30366870
Alignment:
| Q |
24 |
ccgtagttgccagaattcttgcccgcaatgtagtcaacattcaatggatcactggtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcgaa |
123 |
Q |
| |
|
|||||||||||| ||||||||| || |||| || ||| |||| ||||||| ||| |||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
30367251 |
ccgtagttgccaaaattcttgcttgcgatgtggttaacgttcattggatcagcagtagcgataaagcttgtgtttgtgaatcagggtccttcaaatcgaa |
30367152 |
T |
|
| Q |
124 |
atgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgacgcaaaagcgacggtagcataccaattattggcaaattaat |
223 |
Q |
| |
|
| |||||||||| || |||||||| |||||| | || |||| ||| || | | |||||||| | |||| ||||||||||| ||||||| |||| |
|
|
| T |
30367151 |
acgttcctccatgacatttcaaaactaaggtgaaatggtcattgaaatttgacagatgacgcaacaccgacaatagcataccaactattggccaattc-- |
30367054 |
T |
|
| Q |
224 |
tggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatggctagtaatcctccaatacactgaattattgacattgtagat |
323 |
Q |
| |
|
|| | | | || | |||| ||| || |||| |||||| | ||||| || || |||| |||||||||||||| ||||| || ||||||||||| |
|
|
| T |
30367053 |
-ggcataatctcaccgccattgtgtcgcctatagtagatgtaaatgaagaagaggatagctacaaatcctccaatacattgaatcatacacattgtagat |
30366955 |
T |
|
| Q |
324 |
ttactaaagtgtgtgttttcaaattgcatgtgtttttcatgcatgcttataaaatgtgtacatgc-tttacacttatatagccttta |
409 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
30366954 |
ttactttag-gtgtgttt-caaattgcatgtgttttagatgtatgcttataaaatgtgtacatgcttttacacttttatagccttta |
30366870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 404
Target Start/End: Original strand, 13215518 - 13215596
Alignment:
| Q |
326 |
actaaagtgtgtgttttcaaattgcatgtgtttttcatgcatgcttataaaatgtgtacatgctttacacttatatagc |
404 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13215518 |
actaaagtgtatgtttataaattacatgtgtctttcatgcatgcttataaaatgtgtacatgctttgcacttatatagc |
13215596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 30365100 - 30365031
Alignment:
| Q |
340 |
tttcaaattgcatgtgtttttcatgcatgcttataaaatgtgtacatgctttacacttatatagccttta |
409 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
30365100 |
tttcgaattgcatgtgtttttaatgtatgcttataaaatgtgtacatactttacacttttatagtcttta |
30365031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 13005892 - 13006057
Alignment:
| Q |
51 |
atgtagtcaacattcaatggatcactggtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccattacctttcaaaatta |
150 |
Q |
| |
|
|||| |||||| |||| ||||||| |||| ||||||||||||| |||||| | |||| ||||| |||||||| |||||||||| | || |||| | |
|
|
| T |
13005892 |
atgtggtcaacgttcattggatcagtggtcgcgataaagcttgtatttgtgtatcagggcccttcgaatcgaaaagttcctccatgatgctttaaaacaa |
13005991 |
T |
|
| Q |
151 |
aggttacataatcatggaatttgaataagtgacgcaaaagcgacggtagcataccaattattggca |
216 |
Q |
| |
|
||||| |||||||||| || ||| ||| |||| ||||| | ||||||||||||| ||| ||||| |
|
|
| T |
13005992 |
aggttgcataatcatgtaaattggatagatgactcaaaaacctcggtagcataccatttactggca |
13006057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 409
Target Start/End: Complemental strand, 13067067 - 13067024
Alignment:
| Q |
366 |
atgcttataaaatgtgtacatgctttacacttatatagccttta |
409 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| |||||| |
|
|
| T |
13067067 |
atgcttataaaatgtgtacatgctttacaattttatatccttta |
13067024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 220
Target Start/End: Complemental strand, 19278233 - 19278109
Alignment:
| Q |
96 |
tttgtgaaccaggctccttcaaatcgaaatgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgacgcaaaagcgacg |
195 |
Q |
| |
|
||||||||||| | ||||| ||| |||| || ||||||| | |||||||| ||||||| |||||||||| | ||| ||| || | |||||| || | |
|
|
| T |
19278233 |
tttgtgaaccaaggtcctttaaactgaaaagtacctccatgatgtttcaaaactaaggttgcataatcatgaatcttggataggttatgcaaaactgatg |
19278134 |
T |
|
| Q |
196 |
gtagcataccaattattggcaaatt |
220 |
Q |
| |
|
||||||| |||||||||||| |||| |
|
|
| T |
19278133 |
gtagcatgccaattattggccaatt |
19278109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 24 - 402
Target Start/End: Original strand, 31376544 - 31376917
Alignment:
| Q |
24 |
ccgtagttgccagaattcttgcccgcaatgtagtcaacattcaatggatcactggtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcgaa |
123 |
Q |
| |
|
|||||||||||| ||||||||| || |||| || ||| || | ||||||| || ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31376544 |
ccgtagttgccaaaattcttgcttgcgatgtggttaacgttaattggatcagcagtggcgataaagcttgtgtttgtgaaccagggtccttcaaatcgaa |
31376643 |
T |
|
| Q |
124 |
atgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgacgcaaaagcgacggtagcataccaattattggcaaattaat |
223 |
Q |
| |
|
| ||||| ||| ||||||||||| |||||| |||| | || ||| || | | |||||||| | |||| |||||||||||| ||||||| |||| || |
|
|
| T |
31376644 |
acattccttcatgacctttcaaaactaaggtgacatggttattgaaatttgacagatgacgcaacaccgacagtagcataccaactattggccaattcat |
31376743 |
T |
|
| Q |
224 |
tggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatggctagtaatcctccaatacactgaattattgacattgtagat |
323 |
Q |
| |
|
| | | || | |||| ||| ||| |||| |||||| | || || || || ||| |||||||||||||| ||||| || ||||||||||| |
|
|
| T |
31376744 |
c---ataatctcaccgccattgtgtcgccaatagtagatgtaaatgacgaagaggatagctgcaaatcctccaatacattgaatcataaacattgtagat |
31376840 |
T |
|
| Q |
324 |
ttactaaagtgtgtgttttcaaattgcatgtgtttttcatgcatgcttataaaatgtgtacatgctttacacttatata |
402 |
Q |
| |
|
||||| || || || |||||||||||||||||||| || |||||||| ||||||||| ||||||||||||| |||| |
|
|
| T |
31376841 |
ttactttag-gtatg-tttcaaattgcatgtgttttaaatttatgcttatgaaatgtgtaaatgctttacacttttata |
31376917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 31385366 - 31385313
Alignment:
| Q |
82 |
cgataaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccat |
135 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||| |||| |||||||||| |
|
|
| T |
31385366 |
cgataaagcttgtgtttgtgaaccaggatacttcgaattgaaacgttcctccat |
31385313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 31385128 - 31385064
Alignment:
| Q |
345 |
aattgcatgtgtttttcatgcatgcttataaaatgtgtacatgctttacacttatatagccttta |
409 |
Q |
| |
|
|||||||||| | ||| ||| ||||||||||||| ||||||||||||| |||| ||||| ||||| |
|
|
| T |
31385128 |
aattgcatgtttgtttgatgtatgcttataaaatatgtacatgctttatacttttatagtcttta |
31385064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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