View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21244_low_4 (Length: 388)
Name: NF21244_low_4
Description: NF21244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21244_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 35225342 - 35225712
Alignment:
| Q |
1 |
aaaaagataaatacttttacaaaattttcatctagcttaaaagttcaatttatttaaaatggaacatactgcataaacttcattgatgaacatgcagaaa |
100 |
Q |
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| T |
35225342 |
aaaaagataaatacttttacaaaattttcatctagcttaaaagttcaatttatttaaaatggaacatactgcataaacttcattgatgaacatgcagaaa |
35225441 |
T |
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| Q |
101 |
ttagtggtttcaggattgttgccgctcaagtccgggtgacaagctttcatgcaatcgtagtaggccttcttgatctgctctggtgtagcatctggaaact |
200 |
Q |
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| T |
35225442 |
ttagtcgtttcaggattgttgccgctcaagtccgggtgacaagctttcatgcaatcgtagtaggccttcttgatctgctctggtgtagcatctggaaact |
35225541 |
T |
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| Q |
201 |
agtcaaaattactaaccaattattagaaaatacaaatgtctaaaatactatcagcaattgcatttgcggctgtgatgccaaggtttttgatatcaccgtg |
300 |
Q |
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| T |
35225542 |
agtcaaaattactaaccaattattagaaaatacaaatgtctaaaatactatcagcaattgcatttgcggctgtgatgccaaggtttttgatgtcaccgtg |
35225641 |
T |
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| Q |
301 |
accacattgcaattgcatatgcttcagctgtatttgaatgcaaatttctataatcttaatgttaacaacac |
371 |
Q |
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| T |
35225642 |
accacattgcaattgcatatgcttcagctgtatttgaatgcaaatttctataatcttaatgttaacaacac |
35225712 |
T |
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Back To:
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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 31172660 - 31172785
Alignment:
| Q |
72 |
cataaacttcattgatgaacatgcagaaattagtggtttcaggattgttgccgctcaagtccgggtgacaagctttcatgcaatcgtagtaggccttctt |
171 |
Q |
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| T |
31172660 |
catagacttcattgatgaaggtgcagaaattagtggtctcaggatcattgccactcaaatccgggtggcaagttttcatacaattgtagtatgccttctt |
31172759 |
T |
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| Q |
172 |
gatctgctctggtgtagcatctggaa |
197 |
Q |
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| T |
31172760 |
gatctgctctggtgttgcatctggaa |
31172785 |
T |
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