View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21244_low_5 (Length: 248)
Name: NF21244_low_5
Description: NF21244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21244_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 69 - 238
Target Start/End: Original strand, 25810621 - 25810785
Alignment:
| Q |
69 |
ctagatgacttattggcaaagaaactattttgtgacattttatgttgtaggtactaaattgtctcnnnnnnnattgttagagacgtgattgtatcttttt |
168 |
Q |
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| T |
25810621 |
ctagatgacttattggtgaagaaactattttgtgacattttatgttgtaggtactaaattgtctctttttttattgttagagacgtgattgtatcttttt |
25810720 |
T |
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| Q |
169 |
taagatagttaaagtaaagattaagttgttctggtttattttttcatagtacaaaagttgattctatttt |
238 |
Q |
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| T |
25810721 |
taagat-----aattaaagattaagttgttctggtttattttttcatagtataaaagttgattttatttt |
25810785 |
T |
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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 25810510 - 25810577
Alignment:
| Q |
1 |
ttggatatgttatggatattttttagaattgacaagtatcgttgatattggtttgaaaaattcttgcc |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25810510 |
ttggatatgttatggatattttttagaattgacaagtatcgttgatattggtttgaaaaattcttgcc |
25810577 |
T |
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