View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21244_low_8 (Length: 203)

Name: NF21244_low_8
Description: NF21244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21244_low_8
NF21244_low_8
[»] chr7 (14 HSPs)
chr7 (1-203)||(4712235-4712437)
chr7 (4-171)||(4630692-4630859)
chr7 (1-169)||(4672443-4672611)
chr7 (1-166)||(4697350-4697515)
chr7 (1-168)||(4666703-4666870)
chr7 (1-194)||(4846175-4846365)
chr7 (1-67)||(4653389-4653455)
chr7 (1-169)||(4863689-4863857)
chr7 (1-172)||(4783995-4784166)
chr7 (131-203)||(4636593-4636668)
chr7 (116-172)||(4816539-4816595)
chr7 (1-86)||(4643521-4643606)
chr7 (25-88)||(4647381-4647444)
chr7 (123-168)||(4643454-4643499)
[»] chr4 (1 HSPs)
chr4 (1-168)||(18925902-18926069)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 7e-85; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 4712235 - 4712437
Alignment:
Q  1 tgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatatttctattaagcttcaacgagaaccagaaagt 100  Q
    |||||||||||||||||||||||  ||| ||||| || | |||||| || ||||||||||||||||  |||| |||||||||||||||||||||||||||    
T  4712235 tgttcataaggattatgctgtgaaaatgtactctcaaaatggaagctctgaaattgaaagagttaacctttcaattaagcttcaacgagaaccagaaagt 4712334  T
Q  101 atctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataatctcgctggtttgaatcccatcaaacacatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712335 atctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataatctcgctggtttgaatcccatcaaacacatta 4712434  T
Q  201 tac 203  Q
    |||    
T  4712435 tac 4712437  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 4630859 - 4630692
Alignment:
Q  4 tcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatatttctattaagcttcaacgagaaccagaaagtatc 103  Q
    |||||||||||||| ||||  |||| ||||| ||||||||||| |||||||||||||||||||| |||| || ||||||| ||||| |||||||| |||     
T  4630859 tcataaggattatgttgtgcttatgtactctcaagaaggaagctctcaaattgaaagagttaatctttcaatcaagcttcgacgagcaccagaaactata 4630760  T
Q  104 tacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataatct 171  Q
     ||||||  || ||||||||| |  |||||||||||||||||||||||||||||||||||| ||||||    
T  4630759 cacacaatatatcgtgatgtcctgctgaatggaattgagattttcaaaataagtgataaaactaatct 4630692  T

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Target: chr7; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 4672611 - 4672443
Alignment:
Q  1 tgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatatttctattaagcttcaacgagaaccagaaagt 100  Q
    ||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| |  | || | |      
T  4672611 tgttcataaggattatgctgtcactatgtactctcaagaaggaagctctcaaattgaaagagttaatctttctattaagcttcaaccactaacaaatatg 4672512  T
Q  101 atctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataat 169  Q
    | |||||||||  || ||||||||| | | |||||||| |||||||||||| |||||||||||||||||    
T  4672511 aactacacaaaagacagtgatgtcacattaaatggaatcgagattttcaaagtaagtgataaaaataat 4672443  T

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Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 4697350 - 4697515
Alignment:
Q  1 tgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatatttctattaagcttcaacgagaaccagaaagt 100  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||| || ||||| ||||||| ||||| | ||    
T  4697350 tgttcataaagattatgctgtgtctatgcactctcaagaaggaagctctcaaattgaaagacttaatctttcaatcaagctacaacgagcaccaggacgt 4697449  T
Q  101 atctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaat 166  Q
    |||| |||||  ||| ||||||||| | ||||||| || |||||||| ||||||| ||||||||||    
T  4697450 atcttcacaagatacggtgatgtcacattgaatggcatcgagattttgaaaataaatgataaaaat 4697515  T

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Target: chr7; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 4666870 - 4666703
Alignment:
Q  1 tgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatatttctattaagcttcaacgagaaccagaaagt 100  Q
    ||||||||||||||||||  |||||||| | ||| ||| ||| |||  ||||||||||||||||||| |||| |||||||||||||||| |||||||| |    
T  4666870 tgttcataaggattatgccttgactatggattctcaaggagggagccgtcaaattgaaagagttaatctttcaattaagcttcaacgagtaccagaaact 4666771  T
Q  101 atctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataa 168  Q
     |||  ||||| ||| |||||||| |  | |||||||| |||||||| ||||||||||| ||||||||    
T  4666770 gtctttacaaaatacagtgatgtccttcttaatggaatcgagattttaaaaataagtgacaaaaataa 4666703  T

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Target: chr7; HSP #6
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 4846175 - 4846365
Alignment:
Q  1 tgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatatttctattaagcttcaacgagaaccagaaagt 100  Q
    |||||||||||||||||||||||  ||  ||||| || | |||||| || ||||||||||||||||| |||| || ||||||||||||  ||||| |       
T  4846175 tgttcataaggattatgctgtgaaaatctactctcaaaatggaagctctgaaattgaaagagttaatctttcaatcaagcttcaacgattaccagcag-- 4846272  T
Q  101 atctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataatctcgctggtttgaatcccatcaaac 194  Q
     || |||||| |||| | |||  |||| |||||||||| |||||||||||| ||||||||||||| ||||| |||||| ||||||||| |||||    
T  4846273 -tcgacacaacttacagagataccatattgaatggaatcgagattttcaaagtaagtgataaaaacaatctggctggtatgaatcccaacaaac 4846365  T

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Target: chr7; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4653455 - 4653389
Alignment:
Q  1 tgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaat 67  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4653455 tgttcataaggattatgttgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaat 4653389  T

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Target: chr7; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 4863857 - 4863689
Alignment:
Q  1 tgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatatttctattaagcttcaacgagaaccagaaagt 100  Q
    |||||||||||||||| ||||| ||||  ||||||||||||||||| |||||||||||||||||||  ||||  | ||| | |||| |  |||| | |      
T  4863857 tgttcataaggattatactgtgtctataaactctgaagaaggaagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagacc 4863758  T
Q  101 atctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataat 169  Q
    || |  ||||| ||||||||||| |   |||||||||| |||||||| |||||||| ||||||||||||    
T  4863757 atgtttacaaaataccgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataat 4863689  T

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Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 4783995 - 4784166
Alignment:
Q  1 tgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatatttctattaagcttcaacgagaaccagaaagt 100  Q
    |||||||||||||||||| |||||||||   ||| |||  |||||| |||||||||||| ||||||| |||| || ||||| ||||||  |||| ||  |    
T  4783995 tgttcataaggattatgccgtgactatgggttctcaaggcggaagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaacct 4784094  T
Q  101 atctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataatctc 172  Q
    ||    ||    || ||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||    
T  4784095 atgcctacggtatatcgtgatgtcacgttgaatggaattgagattttgaaaataagtgataaaaataatctc 4784166  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 4636668 - 4636593
Alignment:
Q  131 aatggaattgagattttcaaaataagtgataaaaataa---tctcgctggtttgaatcccatcaaacacattatac 203  Q
    |||||||| |||||||||||||| ||||||||| ||||   |||||||||||||||||||| ||||||||||||||    
T  4636668 aatggaatcgagattttcaaaattagtgataaatataacaatctcgctggtttgaatcccaacaaacacattatac 4636593  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 4816539 - 4816595
Alignment:
Q  116 cgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataatctc 172  Q
    ||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||    
T  4816539 cgtgatgtcacgttgaatggaattgagattttgaaaataagtgataaaaataatctc 4816595  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 4643606 - 4643521
Alignment:
Q  1 tgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatatttctattaagcttcaac 86  Q
    ||||||||||||||||||  || ||||| ||| | ||||||||||| ||||| ||||||||| |||| |||| || ||||||||||    
T  4643606 tgttcataaggattatgcaatgtctatggactatcaagaaggaagctctcaacttgaaagagctaatctttcaatcaagcttcaac 4643521  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 4647444 - 4647381
Alignment:
Q  25 tatgcactctgaagaaggaagcactcaaattgaaagagttaatatttctattaagcttcaacga 88  Q
    |||| ||||| ||| |||||| | ||||||||||||||||||| |||| || ||||||||||||    
T  4647444 tatgtactctcaaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttcaacga 4647381  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 4643499 - 4643454
Alignment:
Q  123 tcataatgaatggaattgagattttcaaaataagtgataaaaataa 168  Q
    ||||| |||||||||| |||||||| ||||||||||| ||||||||    
T  4643499 tcatattgaatggaatcgagattttaaaaataagtgacaaaaataa 4643454  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 18925902 - 18926069
Alignment:
Q  1 tgttcataaggattatgctgtgactatgcactctgaagaaggaagcactcaaattgaaagagttaatatttctattaagcttcaacgagaaccagaaagt 100  Q
    ||||||||||||||||| |||||||||| |||||  |||||||||| | |||||| ||||||||||| |||| || ||||| ||||||| |||||||| |    
T  18925902 tgttcataaggattatgttgtgactatgtactctcgagaaggaagctcgcaaattaaaagagttaatctttcaataaagctacaacgagcaccagaaaat 18926001  T
Q  101 atctacacaaattaccgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataa 168  Q
    |||||| |||| |||||| |||||| | ||||||| || |||||||| ||||||||||| ||||||||    
T  18926002 atctactcaaaataccgtaatgtcacattgaatgggatcgagattttgaaaataagtgacaaaaataa 18926069  T

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