View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21245_high_10 (Length: 521)

Name: NF21245_high_10
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21245_high_10
NF21245_high_10
[»] chr5 (4 HSPs)
chr5 (1-512)||(15401928-15402439)
chr5 (106-320)||(15400412-15400620)
chr5 (114-188)||(27998605-27998681)
chr5 (334-380)||(15400123-15400169)
[»] chr4 (3 HSPs)
chr4 (114-188)||(47147537-47147611)
chr4 (114-156)||(49686891-49686933)
chr4 (114-188)||(40018231-40018307)
[»] chr8 (1 HSPs)
chr8 (114-188)||(23023389-23023465)
[»] chr2 (2 HSPs)
chr2 (114-188)||(8197583-8197659)
chr2 (114-188)||(8202343-8202419)
[»] chr3 (2 HSPs)
chr3 (111-155)||(5852343-5852387)
chr3 (114-179)||(46367429-46367496)
[»] chr7 (1 HSPs)
chr7 (114-188)||(40138990-40139066)
[»] chr1 (1 HSPs)
chr1 (114-155)||(39525964-39526005)


Alignment Details
Target: chr5 (Bit Score: 496; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 15402439 - 15401928
Alignment:
Q  1 tctgttttgtttgcttgtttcctctgcttttcctctcaactctatcaacaacctacgtgttacgaccctcgtgtttacgatcctacttaaaaatccaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15402439 tctgttttgtttgcttgtttcctctgcttttcctctcaactctatcaacaacctacgtgttacgaccctcgtgtatacgatcctacttaaaaatccaaac 15402340  T
Q  101 ctgagtacatctgcatggatcaaacgacgtcataatattccatcatttatcatatctatccaatttattaatctctagacctttcttatatagttttcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402339 ctgagtacatctgcatggatcaaacgacgtcataatattccatcatttatcatatctatccaatttattaatctctagacctttcttatatagttttcta 15402240  T
Q  201 agtcttcctgtacctcgagcgatttgactactaacctccatctgatctccactccaaaatcaaatactcctagagtttagagtaaattactaaaaaacaa 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15402239 agtcttcctgtacctcgagcgatttgactactaacctccgtctgatctccactccaaaatcaaatagtcctagagtttagagtaaattactaaaaaacaa 15402140  T
Q  301 taacaaagtaaattgtattaataaaggtgtcagaccaggttttgataaaagagaattcattgcaaattgcaatgtgaatacgattgagtctgcgtcagct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402139 taacaaagtaaattgtattaataaaggtgtcagaccaggttttgataaaagagaattcattgcaaattgcaatgtgaatacgattgagtctgcgtcagct 15402040  T
Q  401 gcatttgatcgtgattctcctcaatgtcaagaaccgtcacatgacttccaccaatttaaaaccttggtgctaagtgttcattattcataaaacttgcgtg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15402039 gcatttgatcgtgattctcctcaatgtcaagaaccgtcacatgacttccaccaatttaaaaccttggtgctaagtgttcattattcataaaacttgcgtg 15401940  T
Q  501 ttacatattctt 512  Q
    |||||| |||||    
T  15401939 ttacattttctt 15401928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 106 - 320
Target Start/End: Complemental strand, 15400620 - 15400412
Alignment:
Q  106 tacatctgcatggatcaaacgacgtcataatattccatcatttatcatatctatccaatttattaatctctagacctttcttatatagttttctaagtct 205  Q
    ||||| || |||||||||||||||||||||||| | ||||| ||||| ||||||| |||||||||||||||| ||| || |||||  ||||| |||||||    
T  15400620 tacatttgtatggatcaaacgacgtcataatatcctatcatatatcacatctatcaaatttattaatctctaaaccctttttata--gttttttaagtct 15400523  T
Q  206 tcctgtacctcgagcgatttgactactaacctccatctgatctccactccaaaatcaaatactcctagagtttagagtaaattactaa--aaaacaataa 303  Q
    || | ||||||||||||||||||| ||||||||||||| |||||| ||| ||||||| ||||||      |||| |||||||||||||  ||||||||||    
T  15400522 tcatctacctcgagcgatttgactgctaacctccatctaatctccgctcgaaaatcacatactc------tttatagtaaattactaaagaaaacaataa 15400429  T
Q  304 caaagtaaattgtatta 320  Q
    ||||||||||| |||||    
T  15400428 caaagtaaattttatta 15400412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 27998681 - 27998605
Alignment:
Q  114 catggatcaaacgacgtcataatattccatcatttatcatat--ctatccaatttattaatctctagacctttctta 188  Q
    ||||||||||||||||||||||||||| ||||| |||||| |  ||||| || | |||||||| |||| ||||||||    
T  27998681 catggatcaaacgacgtcataatattctatcatatatcatgttcctatctaactcattaatctgtagatctttctta 27998605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 380
Target Start/End: Complemental strand, 15400169 - 15400123
Alignment:
Q  334 accaggttttgataaaagagaattcattgcaaattgcaatgtgaata 380  Q
    |||||||||| |||| ||| | |||||||||||||||||||||||||    
T  15400169 accaggttttaataagagatatttcattgcaaattgcaatgtgaata 15400123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 47147611 - 47147537
Alignment:
Q  114 catggatcaaacgacgtcataatattccatcatttatcatatctatccaatttattaatctctagacctttctta 188  Q
    |||||||||||| | | |||||| ||| ||||| |||||||||||||||| | ||||||||||||| ||||||||    
T  47147611 catggatcaaacaatgccataatgttctatcatatatcatatctatccaactcattaatctctagatctttctta 47147537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 49686933 - 49686891
Alignment:
Q  114 catggatcaaacgacgtcataatattccatcatttatcatatc 156  Q
    ||||| |||||||||| |||||||||||||||| |||||||||    
T  49686933 catggttcaaacgacgccataatattccatcatatatcatatc 49686891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 40018231 - 40018307
Alignment:
Q  114 catggatcaaacgacgtcataatattccatcatttatcatat--ctatccaatttattaatctctagacctttctta 188  Q
    |||||||||||||||| | |||| ||| ||||| ||||||||  |||||||| | ||| ||||||||| ||||||||    
T  40018231 catggatcaaacgacgccgtaatgttctatcatatatcatatccctatccaactcattgatctctagatctttctta 40018307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 23023465 - 23023389
Alignment:
Q  114 catggatcaaacgacgtcataatattccatcatttatcatat--ctatccaatttattaatctctagacctttctta 188  Q
    ||||||||||||||||||||||||||| ||||| |||||| |  |||||||| | |||||||| |||| ||||||||    
T  23023465 catggatcaaacgacgtcataatattctatcatatatcatgttcctatccaactcattaatctgtagatctttctta 23023389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 8197583 - 8197659
Alignment:
Q  114 catggatcaaacgacgtcataatattccatcatttatcata--tctatccaatttattaatctctagacctttctta 188  Q
    |||||||||||||||| |||||||||| ||||| |||||||  ||||||||| | |||||||| |||| ||||||||    
T  8197583 catggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatctttagatctttctta 8197659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 8202343 - 8202419
Alignment:
Q  114 catggatcaaacgacgtcataatattccatcatttatcata--tctatccaatttattaatctctagacctttctta 188  Q
    |||||||||||||||| |||||||||| ||||| |||||||  ||||||||| | |||||||| |||| ||||||||    
T  8202343 catggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatctttagatctttctta 8202419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 5852343 - 5852387
Alignment:
Q  111 ctgcatggatcaaacgacgtcataatattccatcatttatcatat 155  Q
    ||||||||||||||||||||||||||| || ||||| ||||||||    
T  5852343 ctgcatggatcaaacgacgtcataatactctatcatatatcatat 5852387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 46367429 - 46367496
Alignment:
Q  114 catggatcaaacgacgtcataatattccatcatttatcatatc--tatccaatttattaatctctaga 179  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||  ||||||| | ||| |||||||||    
T  46367429 catggatcaaacgacgtcataatgttctatcatatatcatatccttatccaactcattcatctctaga 46367496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 40138990 - 40139066
Alignment:
Q  114 catggatcaaacgacgtcataatattccatcatttatcata--tctatccaatttattaatctctagacctttctta 188  Q
    ||||||||||| ||||||||||||||| ||||| | |||||  |||||| ||   ||||||||||||| ||||||||    
T  40138990 catggatcaaatgacgtcataatattctatcatatgtcatatttctatcaaacgcattaatctctagatctttctta 40139066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 39526005 - 39525964
Alignment:
Q  114 catggatcaaacgacgtcataatattccatcatttatcatat 155  Q
    |||||||||||||||| |||||||||| ||||| ||||||||    
T  39526005 catggatcaaacgacgccataatattctatcatctatcatat 39525964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University