View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_high_12 (Length: 460)
Name: NF21245_high_12
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 37027359 - 37027805
Alignment:
| Q |
1 |
tcaacctctaattttgtgcattagtgttaatccaattccaatggagtcaagagcttgcatccttagattcaacattgcacatctttgcctcttgatgcta |
100 |
Q |
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| T |
37027359 |
tcaacctctaattttgtgcattagtgttaatccaattccaatggagtcaagagcttacatccttagattcaacattgcacatctttgcctcttgatgcta |
37027458 |
T |
|
| Q |
101 |
gtttccactcttttccctttgtgtggtaaaccatgcatataaattatatgattatttcatatactaatctatctatgtaactttagttt-----gtgtaa |
195 |
Q |
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| T |
37027459 |
gtttccactcttttccctttgtgtggtaaaccatgcatataaattatatgattatttcatatactaatctatctatgtaacttcagtttaatttgtgtag |
37027558 |
T |
|
| Q |
196 |
taatttataaaacatatgtaacttttgttaaatttgcagatgctataaatcatggaagaggtagtagaagctactccatcaaatcatggaagaaactcaa |
295 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37027559 |
taattaataaaacatatgtaacttttgttaaatttgcagatgctataaatcatggaagaggtagtagaagctactccatcaaatcatggaagaaactcaa |
37027658 |
T |
|
| Q |
296 |
attttcatcatttggctactcagacttagattcttcatatggtactccttcttctcaaccacttccacctttcaattcacttgctccacaacctacctct |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37027659 |
attttcatcatttggctactcagacttagattcttcatatggtactccttcttctcaaccacttccacctttcaattcacttgctccacaacctacctct |
37027758 |
T |
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| Q |
396 |
ctaccaccttattcacctgttccaaacccacctcatgatgtttttag |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37027759 |
ctaccaccttattcacctgttccaaacccacctcatgatgtttttag |
37027805 |
T |
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