View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21245_high_15 (Length: 427)
Name: NF21245_high_15
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_15 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 411
Target Start/End: Complemental strand, 2630233 - 2629840
Alignment:
| Q |
16 |
atcagaaaatgtaaattgtaagatagttaagtataataggttctgggcttctggaatctaagctatcatttatgtgatttcagtatcttttttctggaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2630233 |
atcagaaaatgtaaattgtaagatagttaagtataataggttctgggcttctggaatctaagctatcatttatgtgatctcagtatcttttttctggaga |
2630134 |
T |
|
| Q |
116 |
gtatttcagtggtatgcctaatgtgcaggagatgttttttatgtaaactggaacgaagcacttcctggagctactgcagtagtctcaaccctcggaggtt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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|
| T |
2630133 |
gtatttcagtggtatgcctaatgtgcaggagatgttttttatgtaaactggaacgaagcacttcctggagctactgcagtagtctcaaccctcagaagtt |
2630034 |
T |
|
| Q |
216 |
ttggtagcgaggaacaaatgagtaagattaacagcgaggctaatgttgtggctgtaaatgctgcaaacgaatatggtgagccatctcattgagcgttatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
2630033 |
ttggtagcgaggaacaaatgagtaagattaacagcgaggctaatgt--tggctgcaaatgctgcaaacgaatatggtgagccatctcattgagcgctatt |
2629936 |
T |
|
| Q |
316 |
ttgcagtaaaattattcacttgcatttatcttttatctttcaagtttgactctattattgtagccctaaactttcatgcatacccttccataaaac |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2629935 |
ttgcagtaaaattattcacttgcatttatcttttatcttttaagtttgactctattattgtagccctaaactttcatgcatacccttccataaaac |
2629840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 46 - 411
Target Start/End: Complemental strand, 22980124 - 22979758
Alignment:
| Q |
46 |
gtataataggttctgggcttctggaatctaagctatcatttatgtgatttcagtatcttttttctggagagtatttcagtggtatgcctaatgtgcagga |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22980124 |
gtataataggttctgggcttctggaatctaagctatcatttatgtgatctcagtatcttttttctggagagtatttcagtggtatgcctaatgtgcagga |
22980025 |
T |
|
| Q |
146 |
gatgtttttt-atgtaaactggaacgaagcacttcctggagctactgcagtagtctcaaccctcggaggttttggtagcgaggaacaaatgagtaagatt |
244 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22980024 |
gatgtttttttatataaactggaacgaagcacttcctggagctactgcagtagtctcaaccctcggaggttttggtagcgaggaacaaatgagtaagatt |
22979925 |
T |
|
| Q |
245 |
aacagcgaggctaatgttgtggctgtaaatgctgcaaacgaatatggtgagccatctcattgagcgttattttgcagtaaaattattcacttgcatttat |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
22979924 |
aacagcgaggctaatgttgtggctgtaaatgctgcaaacgaatatggtgagccatctcattgagcgttattttgcagttaaattattcacttgcatttat |
22979825 |
T |
|
| Q |
345 |
cttttatctttcaagtttgactctattattgtagccctaaactttcatgcatacccttccataaaac |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22979824 |
cttttatctttcaagtttgactctattattgtagccctaaactttcatgcatacccttccataaaac |
22979758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 46 - 411
Target Start/End: Original strand, 23808280 - 23808646
Alignment:
| Q |
46 |
gtataataggttctgggcttctggaatctaagctatcatttatgtgatttcagtatcttttttctggagagtatttcagtggtatgcctaatgtgcagga |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23808280 |
gtataataggttctgggcttctggaatctaagctatcatttatgtgatctcagtatcttttttctggagagtatttcagtggtatgcctaatgtgcagga |
23808379 |
T |
|
| Q |
146 |
gatgtttttt-atgtaaactggaacgaagcacttcctggagctactgcagtagtctcaaccctcggaggttttggtagcgaggaacaaatgagtaagatt |
244 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23808380 |
gatgtttttttatataaactggaacgaagcacttcctggagctactgcagtagtctcaaccctcggaggttttggtagcgaggaacaaatgagtaagatt |
23808479 |
T |
|
| Q |
245 |
aacagcgaggctaatgttgtggctgtaaatgctgcaaacgaatatggtgagccatctcattgagcgttattttgcagtaaaattattcacttgcatttat |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
23808480 |
aacagcgaggctaatgttgtggctgtaaatgctgcaaacgaatatggtgagccatctcattgagcgttattttgcagttaaattattcacttgcatttat |
23808579 |
T |
|
| Q |
345 |
cttttatctttcaagtttgactctattattgtagccctaaactttcatgcatacccttccataaaac |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23808580 |
cttttatctttcaagtttgactctattattgtagccctaaactttcatgcatacccttccataaaac |
23808646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 873895 - 874151
Alignment:
| Q |
22 |
aaatgtaaattgtaagatagttaagtataataggttctgggcttctggaatctaagctatcatttatgtgatttcagtatcttttttctggagagtattt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
873895 |
aaatgtaaattgtaagatagttaagtataataggttctgggcttctggaatctaagctatcatttatgtgatctcagtatcttttttctggag--tattt |
873992 |
T |
|
| Q |
122 |
cagtggtatgcctaatgtgcaggagatgttttttatgtaaactggaacgaagcacttcctggagctactgcagtagtctcaaccctcggaggttttggta |
221 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
873993 |
cagtgttattcctaatgtgcaggagatgttttttatgtaaactggggcgaagtacttcctggagctactgcagtagtctcaaccctcggaggttttggta |
874092 |
T |
|
| Q |
222 |
gcgaggaacaaatgagtaagattaacagcgaggctaatgttgtggctgtaaatgctgca |
280 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
874093 |
gcgaggaacaaatgagtaagattaacggcgaggctaatgttgtggctgtaaatgctgca |
874151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 28 - 411
Target Start/End: Original strand, 12241427 - 12241810
Alignment:
| Q |
28 |
aaattgtaagatagttaagtataataggttctgggcttctggaatctaagctatcatttatgtgatttcagtatcttttttctggagagtatttcagtgg |
127 |
Q |
| |
|
||||| |||||||| ||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| || |
|
|
| T |
12241427 |
aaattataagatagataaatataattggttctgggcttctggaatctaagttatcatttatgtgatctcactatcttttttctggagagtatttcattgt |
12241526 |
T |
|
| Q |
128 |
tatgcctaatgtgcaggagatgttttttatgtaaactggaacgaagcacttcctggagctactgcagtagtctcaaccctcggaggttttggtagcgagg |
227 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
12241527 |
tgtgcctaatatgcaggagatgttttttatgtaaactgggacgaagtacttcctggagctactgcagtagtctcaacccttggaggttttggtagcgagg |
12241626 |
T |
|
| Q |
228 |
aacaaatgagtaagattaacagcgaggctaatgttgtggctgtaaatgctgcaaacgaatatggtgagccatctcattgagcgttattttgcagtaaaat |
327 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
12241627 |
aacaaatgagtaagattaacggcgaggctaatgttgtggctgtaaatgctgcaaacgaatacggtgagccatctcattgagcattattttgcagttaaat |
12241726 |
T |
|
| Q |
328 |
tattcacttgcatttatcttttatctttcaagtttgactctattattgtagccctaaactttcatgcatacccttccataaaac |
411 |
Q |
| |
|
|||||||||||| |||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12241727 |
tattcacttgcaattatcttttacctttcatgtttgactatattattgtagccctaaactttcatgcatacccttccataaaac |
12241810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 22 - 280
Target Start/End: Complemental strand, 274315 - 274059
Alignment:
| Q |
22 |
aaatgtaaattgtaagatagttaagtataataggttctgggcttctggaatctaagctatcatttatgtgatttcagtatcttttttctggagagtattt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
274315 |
aaatgtaaattgtaagatagttaagtataatagtttctgggcttctggaatctaagctatcatttatgtgatctcagtatcttttttctgtag--tattt |
274218 |
T |
|
| Q |
122 |
cagtggtatgcctaatgtgcaggagatgttttttatgtaaactggaacgaagcacttcctggagctactgcagtagtctcaaccctcggaggttttggta |
221 |
Q |
| |
|
| ||| ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
274217 |
ctgtgttattcctaatgtgcaggagatgttttttatgtaaactggggcgaagtacttcctggagctactgcagtagtctcaaccctcggaggttttggta |
274118 |
T |
|
| Q |
222 |
gcgaggaacaaatgagtaagattaacagcgaggctaatgttgtggctgtaaatgctgca |
280 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
274117 |
gcgaggaacaaatgagtaagattaacggcgaggctaatgttgtggctgtaaatgctgca |
274059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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