View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21245_high_16 (Length: 417)
Name: NF21245_high_16
Description: NF21245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21245_high_16 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 13716049 - 13716440
Alignment:
| Q |
16 |
tattcaacacaggctgaacaaaaggcttaagccgaagccaaatggaagaagcaatatgatgtttgatcggagaactcgttatgaaaaatctctttctgca |
115 |
Q |
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| T |
13716049 |
tattcaacacaggctgaacaaaaggcttaagccgaagccaaatggaagaagcaatatgatgcttgatcggagaactcgttatgaaaaaactatttctgca |
13716148 |
T |
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| Q |
116 |
cataagagcccactgctcatcagaggtgatgagtttccaacaaaggaacaacattgcagttttattaacaatcaaaggatctcgcagtgctaacccaccc |
215 |
Q |
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| T |
13716149 |
cataagagcccactgctcatcagaggtgatgagtttccaacaaagaaacaacattgcagttttattaacaatcaaaggatctcgcagtgctaacccaccc |
13716248 |
T |
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| Q |
216 |
tcaactttgggcctgcaaatattgctcctagatacaattcaaatcttctttgtcgaagtatctccgctccaaatgaaattagtaaacattcttctaagct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13716249 |
tcaactttgggcctgcaaatattgctcctagatacaatgcaaatcttctttgtcgaagtatctccgctccaaatgaaattagtaaacattcttctaagct |
13716348 |
T |
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| Q |
316 |
gcttaatcaaagagataggccagacatacacatggaaggagtatactagcatgcgaataaccaccgagttgacaagttgaaccctccctatg |
407 |
Q |
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| T |
13716349 |
gcttaatcaaagagataggccagacatacacatggaaggagtatactagcatgcgaataattaccgagttgacaagttgaacgctccctatg |
13716440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 33 - 327
Target Start/End: Original strand, 36334 - 36634
Alignment:
| Q |
33 |
acaaaaggcttaagccgaagccaaatggaagaagcaatatgatgtttgatcggagaactcgttatgaaaaatctctttctg-cacataagagcccactgc |
131 |
Q |
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||||||| |||||||||| ||||||| ||| ||| | ||||||||| ||||||||||| || | ||||||||||| ||| ||||||| |||| |||| |
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| T |
36334 |
acaaaagacttaagccgaggccaaatcgaataagtagtatgatgttggatcggagaacccgatcgtaaaaatctctt-ctgacacataatagcct-ctgc |
36431 |
T |
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| Q |
132 |
tcatcagaggtgatgagtttccaacaaaggaacaacattgcagttttattaacaatcaaaggatctcgcagtgctaacccaccctc-------aactttg |
224 |
Q |
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|||||||| ||||| |||||||||| ||| |||||||| || ||||| |||||||||||| | |||| |||||||| ||| | | ||||| |
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| T |
36432 |
tcatcagaagtgataagtttccaaccaagaaacaacatcgccactttatcaacaatcaaagggtaatgcagagctaaccccccccccccccccagctttg |
36531 |
T |
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| Q |
225 |
ggcctgcaaatattgctcctagatacaattcaaatcttctttgtcgaagtatctccgctccaaatgaaattagtaaacattcttctaagctgcttaatca |
324 |
Q |
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|||| |||| ||||||| || | ||||| |||||||| ||| | |||||||||||||||||||| |||||||||||||||||||||||||| ||||| | |
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| T |
36532 |
ggccaacaaagattgctcgtacagacaatgcaaatcttttttattgaagtatctccgctccaaataaaattagtaaacattcttctaagctgtttaatga |
36631 |
T |
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| Q |
325 |
aag |
327 |
Q |
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||| |
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| T |
36632 |
aag |
36634 |
T |
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